Query= MSMg01no088_g14.b1 MSMg01no088_g14.b1 CHROMAT_FILE:
MSMg01no088_g14.b1 PHD_FILE: MSMg01no088_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:52 2005
(327 letters)
>mm_chr3_71835010_71835736
Length = 727
Score = 565 bits (292), Expect = e-165
Identities = 319/328 (97%), Gaps = 2/328 (0%)
Strand = Plus / Plus
Query: 1 acaaaactagtgcctaatgagctactattttacattatttcagcataatttaacattgct 60
|||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 acaaaagtagtgcctaataagctactattttacattatttcagtataatttaacattgct 260
Query: 61 actataagcaaatatttt-aatgttataaaaacaataatcattgagaaatatgtcaatca 119
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 actataagcaaa-atttttaatgttataaaaacaataatcattgacaaatatgtcaatca 319
Query: 120 tcttttgaaatcaataattaagggatgtggtagacagagcctacaaaatttcaagccaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcttttgaaatcaataattaagggatgtggtagacagagcctacaaaatttcaagccaaa 379
Query: 180 taaactcacagatctgagaggagaaactgggtgcagcgtcttatccctaactatgaagct 239
| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 tcaactcacagctctgagaggagaaactgggcgcagcgtcttatccctaactatgaagct 439
Query: 240 atctctaattgacacaaactggcaaagaaaaaaataattttctccaatagacttttactg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atctctaattgacacaaactggcaaagaaaaaaataattttctccaatagacttttactg 499
Query: 300 gttatattgaccacattttagtttaagc 327
||||||||||||||||||||||||||||
Sbjct: 500 gttatattgaccacattttagtttaagc 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_g14.g1 MSMg01no088_g14.g1 CHROMAT_FILE:
MSMg01no088_g14.g1 PHD_FILE: MSMg01no088_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:52 2005
(517 letters)
>mm_chr3_71923078_71923994
Length = 917
Score = 924 bits (478), Expect = 0.0
Identities = 505/514 (98%)
Strand = Plus / Minus
Query: 1 tgttggtggagcagcagagaataagttttgactggtgcaagggataatgataggattgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tgttggtggagcagcagagaataagttttgactggtgcaagggataatgataggattgat 655
Query: 61 gagacatagccttttgttttcttgaaggtctgcaattactagcgtgaagccccttttcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gagacatagccttttgttttcttgaaggtctgcaattactagcgtgaagccccttttcta 595
Query: 121 agtcattttgcacatttgctgagcagactttgaagccacagtagtcaatatctctgtgac 180
|||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 594 agtcattttgcacattcactgagcagactttgaagccacagcagtaaatatctctgtgac 535
Query: 181 tgtgctgatggtggtggtagtggcagcatgagctgtagagaaagcagtaatggagccagg 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgtgctgatggtggtgatagtggcagcatgagctgtagagaaagcagtaatggagccagg 475
Query: 241 gatggcaaaggcagttgggaaacagcagtggcaggatgtgttttactggggacagatgta 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 474 gatggcaaaggcagttgggaaacagcagtggcagcatgtgttttactggggacagatgta 415
Query: 301 ataatggtaagagtcagctaaagagttgctggatggcccagtagaggttttgggtcttta 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 414 ataatggtaagagtcagctaaagagttgctggatgggttagtagaggttttgggtcttta 355
Query: 361 agacagtttcagatatactaagccttggaggtgctgtcaaacattaaggatctctggcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agacagtttcagatatactaagccttggaggtgctgtcaaacattaaggatctctggcat 295
Query: 421 tgaaggctgaactggagatttcaacatgtggatagctagatctgacagtcccaaaatcgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tgaaggctgaactggagatttcaacatgtggatagctagatctgacagtcccaaaatcgt 235
Query: 481 aggtctataagatagttattgcaatatctatctg 514
||||||||||||||||||||||||||||||||||
Sbjct: 234 aggtctataagatagttattgcaatatctatctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
