BAC Information

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BAC

Clone NameMSMg01-088H01
Chromosome3 (Build37)
Map Location 9,426,253 - 9,426,693
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620966, Stmn2, Hey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886, Zbtb10
Downstream geneZfp704, Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088H01.T7 (MSMg01no088_h01.b1)MSMg01-088H01.TJ (MSMg01no088_h01.g1)
ACCAG307195AG307196
length673681
length of high quality
(start - end)
403 (46 - 448)440 (56 - 495)
definitionCHROMAT_FILE: MSMg01no088_h01.b1 PHD_FILE: MSMg01no088_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:54 2005CHROMAT_FILE: MSMg01no088_h01.g1 PHD_FILE: MSMg01no088_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTTTTCCGAGAGGATCCGCGGAATTCATCCTACTACGTTTCCATTG
CTCTGATAAATAGAGTGACCAAAAGCAGCCTGGGAGGAGGGGATTCCTTT
GGCTTGCACATCTGTCATTGAGGAAAGCCAGGTAGGAGCTCAAGCAGGGT
AGGAACTGATGCAGAAGCCATAGAGACTGCTGCCTAATCACTCGCTTGCC
ACTGCTTGTCCTGCCGGCTTTCTTGTATAACCCCAAACTGTCTGTCCAAG
GATGGCACCACCCAGAGTGGGCTGGACCCTCCACTTCAGTCATTGATCAA
GACATTGCTTCACTGAGCTGTGCAGACCAGTCTGATGGAGGCTTTCTCTC
CACCGAGATGACTCCAGCTTGGGTCAAGTTAACAGGAAGCTGATACAGAG
CTGAAGGGAGCGAGCGCTGCTGTCCGTCAGGAAGAGCTGCACTTGCAGTT
CAGCACCACTGGGTTGGACCTCAGAGCTGCCTCCTGTCCAGTTAATGGCT
GTGCCTTCCTCTGCATACAGTGTAAACCAAGTACAGCCCACAGTGCAGAC
GGCTATGTGCAGCTGCAGAGTTACGCCATTGCTTAGCGTAATTACCTGTG
AAGTGTGTCCACCCCTGAAGATAGTGTAGCTTAGATACATAACCCCTGTT
CAGTATACCTCACTGCCTGGCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTGTGCAGAACCCCTAGCTATAAAGGGCTGGATGTATGATTTCAT
ACCACTTTGTAGGTGTTTACTTGTAGCTTAGACCCTCCCTAGTTTTTCCT
GCTTCCTGTACATTAAGGCTTTCCAGCCTCCTGCAGCTGCCATCTGCCCT
GGAGAGCATCCTGGAGCCCTGGGAGGCCCTGGAGGCCATATAGGTAGTTT
GAGCACTGTTCACCAACACCAATGTTCTTATGTGTCTTTGTGGCTAAAAC
ACAGGCACTAAGTCAAAGGCCAGGAGCATGAGGCCTGAGCATGAATGACA
AAGGAGAGCTGGCATCAAAGTGGCCTGCACTATGCTATGGCTCACAACAA
AGAAACCTCTACTTGTTGGCTACGAAAGTAGCACCAAGCTTTCCTGGTGT
GGTTTGGTGTGTGTCTATGTGTAACACGAGACCTAACAGCTGAACAGAAG
TGCAAGCGCATCTGTGATTTTGAAGGTGGACATAGTGAGTTCTAGTGGAT
AGCAGGTCTCTGCAGAGGAAGACCAGCTGGCTTAGAACCCGAATGCCCAC
TAGATATTGTTTTCTTACCACAGGGTCACAGGCAGTGGCTCAGCGCGACA
GCTGGCTTGACACAGGGACTGTGCATCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_h01.g1 MSMg01no088_h01.g1 CHROMAT_FILE:
MSMg01no088_h01.g1 PHD_FILE: MSMg01no088_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:55 2005
         (440 letters)



>mm_chr3_9426053_9426893
          Length = 841

 Score =  799 bits (413), Expect = 0.0
 Identities = 434/441 (98%), Gaps = 1/441 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtgcagaacccctagctataaagggctggatgtatgatttcataccactttgtaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtgcagaacccctagctataaagggctggatgtatgatttcataccactttgtaggtg 260

                                                                       
Query: 61  tttacttgtagcttagaccctccctagtttttcctgcttcctgtacattaaggctttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacttgtagcttagaccctccctagtttttcctgcttcctgtacattaaggctttcca 320

                                                                       
Query: 121 gcctcctgcagctgccatctgccctggagagcatcctggagccctgggaggccctggagg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctcctgcagccgccatctgccctggagagcatcctggagccctgggaggccctggagg 380

                                                                       
Query: 181 ccatataggtagtttgagcactgttcaccaacaccaatgttcttatgtgtctttgtggct 240
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 381 ccatataggtagtttgagcactgttcaccaacaccaatgttcttatgtatccttgtggct 440

                                                                       
Query: 241 aaaacacaggcactaagtcaaaggccaggagcatgaggcctgagcatgaatgacaaagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaacacaggcactaagtcaaaggccaggagcatgaggcctgagcatgaatgacaaagga 500

                                                                       
Query: 301 gagctggcatcaaagtgg-cctgcactatgctatggctcacaacaaagaaacctctactt 359
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gagctggcatcaaagtgggcctgcactatgctatggctcagaacaaagaaacctctactt 560

                                                                       
Query: 360 gttggctacgaaagtagcaccaagctttcctggtgtggtttggtgtgtgtctatgtgtaa 419
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttggctaccaaagtagcaccaagctttcctggtgtggtttggtgtgtgtctatgtgtaa 620

                                
Query: 420 cacgagacctaacagctgaac 440
           || ||||||||||||||||||
Sbjct: 621 caggagacctaacagctgaac 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 841
Length adjustment: 9
Effective length of query: 431
Effective length of database: 832
Effective search space:   358592
Effective search space used:   358592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)