BAC Information

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BAC

Clone NameMSMg01-088M21
Chromosome3 (Build37)
Map Location 89,346,143 - 89,346,341
singlet/doubletsinglet
Overlap geneKcnn3
Upstream geneRab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk
Downstream geneLOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088M21.T7 (MSMg01no088_m21.b1)MSMg01-088M21.TJ (MSMg01no088_m21.g1)
ACCAG307465AG307466
length726695
length of high quality
(start - end)		176 (42 - 217)199 (104 - 302)
definitionCHROMAT_FILE: MSMg01no088_m21.b1 PHD_FILE: MSMg01no088_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:24 2005CHROMAT_FILE: MSMg01no088_m21.g1 PHD_FILE: MSMg01no088_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAAT
TCCAAGAGGACACAGTCCATGGTGACAGCAAAGTGTGGCAAAAGGAGCAT
CAGGAAACGGTCTAGCGCATCTATAGTCAGAAAGTGTGAACCAGGAAGAG
CCATGAATCCTGGTTTGAGCAGGTAACAGCACAGTACATCTTGATGGGGG
GTGGGGGGAGGGGCGAGGTCCANTATGCATGGACGCCTGTGTCATCGCAT
GCAATCCTTGTACCCGCCTGCTTAGGTCGAGCGCGCCCTTCTCAATTTCT
CCTTCTCCGCGCTCTTTTTTTTTGAGAAGACAACTGCACCCGTGACAGCG
ATATTTTTTTCTTTCCCCCCCCCACCCCCTGTAATTTTCTCTCTTTTTGA
CTTTCGCCCAGATCGGCTCCCCAAAAAAGAAAAAATAATCCGGGTGGCGG
GGGGGGCTATACCGCCGTCATCACTGACTTAATTCACCCGCGTTTATACT
TGCTGTCCCCCCCTCTCCATATTGTACATCACACCCTATTTTTTCCTCCA
TGAATGTACCCATCCCCTCTAATACCCAGCTATTGTCTCTTGCTTCCCTT
GTTCTCCCCATCTCTTCGCTCATCTGGTTCCCTCCCGCTATGCGCCTCCT
CGGCGCCTTGCGTCCTACTCACGCCTATCCTGTATCTTCCCTTCCTTTAT
TTTTCCCTATCTCCCTTTATTCCCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAGAAGACTTTCTAGACAGTGAGTTCTGGAGCTAGATCTGTATCAG
CCTTGTCTTCCAACTGGGAAGCAAAGGAGCCAAGACTTTCCTCTGGGCTT
GAGGATTGTAGAGCACCAGGGAAAGACAAGGTTTACGTTTTCCTGCCCTG
AATAACAAGGGTGTCCCTGAGGGTCACTGTGAGCACTTTAGGGGATTGTC
CTGCAGTTATTCAAACAAGGTTGCTTGGAGGGGTGTGTGTGTGTGTGTGT
GTGTGTCCTCTCCTCTCACCAACATTTCCTTTTTTTTTTTTTTTTCCCCC
CCCCCCCCCTCCAAGATGTGTTTCTTCCCCTACCTAGCTCTTTTTCTCCC
CCCCCATAAAAAATTCATCTTTTCCTCTGTGCTCTTTCCTTTTCCCCTTC
TTCCTTTCCTTTTTATCTCGTCTCTTCTCCCCTCCTTTTTATTTCCCACT
ATATTTACTATCTTTCTTCTCTTTCTACATTTTCCTTTACCCATCTTTAT
CCTCCTTACTTTTTTACCTCATCCTTTGCTCATTTCTTTTTACCCCCCCT
TCCTTTTGATATCTCTATATTCTTTCTCTATTATCCTTCTTCTTATCCTT
TTTTTCTCTTTTACTTTTTCTATCTACTTCTTTCCTCTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_m21.g1 MSMg01no088_m21.g1 CHROMAT_FILE:
MSMg01no088_m21.g1 PHD_FILE: MSMg01no088_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:24 2005
         (199 letters)



>mm_chr3_89345943_89346541
          Length = 599

 Score =  369 bits (191), Expect = e-107
 Identities = 197/199 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcttccaactgggaagcaaaggagccaagactttcctctgggcttgaggattgtagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcttccaactgggaagcaaaggagccaagactttcctctgggcttgaggattgtagag 260

                                                                       
Query: 61  caccagggaaagacaaggtttacgttttcctgccctgaataacaagggtgtccctgaggg 120
           |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 caccagggaaaggcaaggtttacgttttcctgccctaaataacaagggtgtccctgaggg 320

                                                                       
Query: 121 tcactgtgagcactttaggggattgtcctgcagttattcaaacaaggttgcttggagggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactgtgagcactttaggggattgtcctgcagttattcaaacaaggttgcttggagggg 380

                              
Query: 181 tgtgtgtgtgtgtgtgtgt 199
           |||||||||||||||||||
Sbjct: 381 tgtgtgtgtgtgtgtgtgt 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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