Query= MSMg01no089_a07.b1 MSMg01no089_a07.b1 CHROMAT_FILE:
MSMg01no089_a07.b1 PHD_FILE: MSMg01no089_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:41 2005
(187 letters)
>mm_chr3_117813997_117814583
Length = 587
Score = 265 bits (137), Expect = 1e-75
Identities = 168/181 (92%), Gaps = 8/181 (4%)
Strand = Plus / Plus
Query: 11 ggaattcctcaaaatac--taccttgggaaatattcttagcataagttagtcgtcgtttg 68
||||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||
Sbjct: 211 ggaattcctcaaaatacgat---ttgggaaatattcttagcagaagttagtcgt-gtttg 266
Query: 69 agaaaatcatttccactg--tatccttgaaggactgtgtgaatgtgtttggtaatatata 126
|||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 267 agaaaatcattttcgctgtatatccttgaaggaccgtgtgaatgtgtttggtaatatata 326
Query: 127 aaattaaagtatgccatcaagaccacatcctctcaatgtgtttaataagtaaaactccca 186
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 327 aaattaaagtatgccatcaagaccacatcctctcattgtgtttaataagtaaaactccca 386
Query: 187 g 187
|
Sbjct: 387 g 387
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space: 103641
Effective search space used: 103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no089_a07.g1 MSMg01no089_a07.g1 CHROMAT_FILE:
MSMg01no089_a07.g1 PHD_FILE: MSMg01no089_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:41 2005
(570 letters)
>mm_chr3_117956492_117957462
Length = 971
Score = 1035 bits (535), Expect = 0.0
Identities = 562/571 (98%), Gaps = 1/571 (0%)
Strand = Plus / Minus
Query: 1 aacttgtatttttgaccagcttgtgaaatcaatattcaacagttcctacagtcattttga 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 599 aacttgtatttttgaccagcttgtgaaatcaatattcaacagttcctagagtcattttga 540
Query: 61 tactttattggaccatgcttgatatgatagctactgtattttttttgtatttcccctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tactttattggaccatgcttgatatgatagctactgtattttttttgtatttcccctttt 480
Query: 121 tcattgaaatgttgaagactgatctctgccatattttctctttcaccatcataacaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcattgaaatgttgaagactgatctctgccatattttctctttcaccatcataacaaaat 420
Query: 181 agaaagatagttctaatagtatatgtaatagttgagttaaagatacccgtaacaaataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agaaagatagttctaatagtatatgtaatagttgagttaaagatacccgtaacaaataat 360
Query: 241 gtttttaaatatacaaagatatttcttaaatggtacagaattttaaaacgaaattaattg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atttttaaatatacaaagatatttcttaaatggtacagaattttaaaacgaaattaattg 300
Query: 301 gtgaactcatatgaatatatttctattgtctctgggagccatgatttttacaatatt-aa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 299 gtgaactcatatgaatatatttctattgtctctgggagccatgatttttacaatatttaa 240
Query: 360 aaaaaaggaaagggagaatatttcttttaaaatattttaaaagaaaggaaggaaggaaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aaaaaaggaaagggagaatatttcttttaaaatattttaaaagaaaggaaggaaggaaag 180
Query: 420 aacaaagatagaaacaaacaaagaaagcaaaggaaccaggattcttttatatactggtca 479
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aagaaaggtagaaacaaacaaagaaagcaaaggaaccaggattcttttatatactggtca 120
Query: 480 attaaatatgcaataaaagaaagtttcaggtacaggattcattttggcctttttgtgatc 539
|||||||||| || |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 119 attaaatatggaagaaaagaaagtttcagggacaggatttattttggcctttttgtgatc 60
Query: 540 ctcttcctcctacccctcctttcctcctccc 570
|||||||||||||||||||||||||||||||
Sbjct: 59 ctcttcctcctacccctcctttcctcctccc 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space: 538160
Effective search space used: 538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
