BAC Information

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BAC

Clone NameMSMg01-089E10
Chromosome3 (Build37)
Map Location 80,914,512 - 80,914,717
singlet/doubletsinglet
Overlap genePdgfc
Upstream geneEG626797, Gria2, Glrb, EG626841
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089E10.T7 (MSMg01no089_e10.b1)MSMg01-089E10.TJ (MSMg01no089_e10.g1)
ACCAG307817AG307818
length7711,017
length of high quality
(start - end)
206 (135 - 340)---
definitionCHROMAT_FILE: MSMg01no089_e10.b1 PHD_FILE: MSMg01no089_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:01 2005CHROMAT_FILE: MSMg01no089_e10.g1 PHD_FILE: MSMg01no089_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCGGTCNGCCCCGCNCGGCTCTCCCTTCCTTCTCTTTTTTCCTCC
CGAAACNANNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTCTCACTTTCCAATCGCCTACCTTTATTTTT
ATTAATTACTATTCCTGTTAAGTTTTTCTCTGTATTCCTATATATAGAAT
TTTTAGTTTTCTGTATTAGTATTTTAATTCACATTTTCACTTGTTTATTC
TCATACTCTGGGATATGTACACATATCATTTTATATTTTTTATTGCTCAT
TATTTTAATTCTTTACCAATTATTATATGACCCTCTGTTGGGTGGATATG
GCAAGCATGTCAAGTATCAAAAAAGAAAACATGTTTCTTTCACATAATTA
GAGAAGTCATTGCTTAGCCAAGATTTGTTTTGCCCCCCCCCCCCCCCTAT
TATATTTAAAATTGATAACACATTTGAAAGTTTACTTCGAATCTGCCCTG
TGCTAAGTGGTCTAATTATGATTTCTACTTCATGCTCTACGATCTTCTCT
TTGATCTTCCTTTCTTACCCGCGAATTATCTACCTTTTTTATGTGTCCCT
TATTATGTGACTTTCCCACCCCTAATATTATTTCTGATTCCTTCTTTGCT
ACCCCCTTTCTCTTTCCATTTTCATCTACCATTCCTTTAACAACCCTACT
TCCCATGCCTCCGACATAGTACTTCCATTTTTCCCCTACTCTGGTATTTT
TTACCTCCTGCCCCTTGTTAC
TTGCTTTGCTTGTTCTTCNTNNTTCGGTGTGGTTGGTGGTGCGGGCGGGT
GGGCTTGTGGTTCTGGGTGTGGCCTGTGGGTTTGTCGCTGGTGGGGGCGC
TTGGTGATGTGGCGACGGGGCGTGCGGGTGGAGAAAGGGTGGGCAGAGAG
TGCCAGCTGACAGACATGGCTAGACGTAGACTCGCGCGCAGAGTGGGAGT
GTGTTCGCGATTATCGGGTTGTATCGTTCTCCTCTCATTACGACCTTCGC
TCTGTCCGCTGACGCGAAGTTGCATCCAATGTAATTTATACACGCTGCGA
GTGGTCGTTGGAGGCGGAACCATTATACACCATGGCGTGCGCTACGCTCG
AGGTATAGCGTAATCATGAGAAAGAAGATAACTAATAACACATATATATA
AATTGGGAATATCGTATTGGTAGGCGAAGAATGAATAAGTGCACGGAGAC
GTCGGCGCGCGATAGAAAGAAAGAAAGAGAAGAAGGGCAGGCTTCCAGCT
GATAAACCTAATCGACATACAACAAAAAATACATCCAAATATTCACATAA
TAAAAACATCACATAATAATAACCATCCTGTACTTACTTTGTAGACGTAC
AATGAATACAAATAATTGAGCAGACTGCATACGGAAGCGGAAAGTAGGAT
GACATTTACAGTTAGCGGCAGCAGAGAGACAAGATACAATAGAAATAGAC
AGGAAACGCGTATGAGCGCGTAGAACTACAGCGAAGCGAATACAGACAAG
ACGACACAGCAACAAACACACATTATAAAACATACTGATAAGCATAATAC
ACCGCAACAACGACTAGCCGCGCCGTCTCGATTCATAGGACACGCTATAG
ACATATTATATATNTATATCTACGAGCATGCGACGATAGTATAAAAGGCA
AGAGAGTGGAGCGGAGAACGGAATATGATATTAGATTATATATACACACA
TAATAAACCTATATATATATAGCGCATCCACCTCTCGTATTTTCGACATT
ATGTAGCCCCGTGCGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_e10.b1 MSMg01no089_e10.b1 CHROMAT_FILE:
MSMg01no089_e10.b1 PHD_FILE: MSMg01no089_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:01 2005
         (206 letters)



>mm_chr3_80914312_80914917
          Length = 606

 Score =  383 bits (198), Expect = e-111
 Identities = 204/206 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctacctttatttttattaattactattcctgttaagtttttctctgtattcctatata 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 406 gcctacctttatttttattaatttctattcctgttaagtttttctctgtattcctatata 347

                                                                       
Query: 61  tagaatttttagttttctgtattagtattttaattcacattttcacttgtttattctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tagaatttttagttttctgtattagtattttaattcacattttcacttgtttattctcat 287

                                                                       
Query: 121 actctgggatatgtacacatatcattttatattttttattgctcattattttaattcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 actctgggatatgtacacatatcattttatattttttattgctcattattttaattcttt 227

                                     
Query: 181 accaattattatatgaccctctgttg 206
           |||||||||||||||| |||||||||
Sbjct: 226 accaattattatatgagcctctgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)