BAC Information

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BAC

Clone NameMSMg01-089G01
Chromosome3 (Build37)
Map Location 82,071,003 - 82,071,309
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089G01.T7 (MSMg01no089_g01.b1)MSMg01-089G01.TJ (MSMg01no089_g01.g1)
ACCAG307892AG307893
length731778
length of high quality
(start - end)
176 (25 - 200)308 (132 - 439)
definitionCHROMAT_FILE: MSMg01no089_g01.b1 PHD_FILE: MSMg01no089_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:09 2005CHROMAT_FILE: MSMg01no089_g01.g1 PHD_FILE: MSMg01no089_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATTTCCAGAGGATCCGCGGAATTCTTTGTTCACCCCTGAGCCCCA
TTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTT
TATATATGTTGGATATTAGTCCCCTATCTGATTTATGATAGGTAAAGATC
CTTTCCCAATCTGTCGGTGGTCTTTTTGCCTTATTGACGGTGTCTTTTGT
CTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATC
TTACAGCATATGCCATTGCTGTTCTGCTCAGGAATTTTTCCCCTGTGCCC
ATATCTTCCAGGTTTTTCCCCACTTTCTCCTCTATTATTTCCAGCGTCCC
TGGTTTTATGCGAATTTCTTTGATCCACTTATATATGATTTTACTATCCG
GTTTATACGCATCGTATCGATTCTTATTTCCTCTATTCGTATACCCCCCC
GTTTTGCGTCCTCCCCCCATCCGTCGATTATTGCTGTCCCCTCTTCCCTT
GTTTGCCATCCTTTTCTCCCTCCGCTCTATTTTTCCCCCTTCTCCCTTTT
CTCCTTTTTTTTCCCTCCTTCGTTGCTTTTTTATTTCCCCTTTTTTTTGT
CCCCTTTATTCGCCCTGTTTTCCCCCTTATTCCCCCTTCTGCTATCCCCC
TCTTTCACTCTNTTTTATTTTTTTTTTTTTTACGTCCCTCTCTCCCCGCG
TCCGGTTTTTATTTCTCCCCTCCCTCTCTTC
NNNNNNNNNNNNNNNNNNNCCCCTTTTTTTTCTTTCCTTNCCCTTCNNAN
NCTTTTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCACCTCCTGCTTTT
GGTTTTGTTTTGTTTTTGCTTTTCAAGCTCTTAAGATGTATCATTTATTA
ATTTGTTTGAGTTCTCTCTAATTTTAAAAATGTAGGTGCTTAATATTTCT
GTGATTTTGCTGACTTTGTAGTGTTTGTTGTTTGTCTTTAGCTCTGCTTT
TTTTCCTGTAGCCTCTTGGTTTGCTCTTCTTTTCTTCAGTCTGAAGAAAC
TCTTTCAGTCGTCTCTGTAGGGCTTCATTGGTTTGGTGGTATTTATAAAA
TCTTATTTCTCCTTCCAGATATTTTTGATATGCATAGCTGTCTTGGCATC
TGTCATTTTTCTGTTTTTTTTGTATCTGTCATTTTTCAAAATTTGAGGTT
CTGAAAATAGAGTTTCAACTGTATATTATGAGGGAATTTCTTTTCTGATG
CTGCCTATCTCTTATTCTATCTTATCTTTTTGTGATCGATACCTTCTTTG
TGTGCTCGATGGCCTTCCCTTTCCCTCATGTTCCTCGCTTCACCTCTCTG
CATTTTTTTTTCCAACACTTTGACTGGTTCCTTTTTTCTTTCTGTGTCCT
ACTAGTTGATCAACTTTGTTCTTCTTCATAACATCCCCGCTCATTTCTTC
ACATGTATCTCCTTCCCTAATCCCGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_g01.g1 MSMg01no089_g01.g1 CHROMAT_FILE:
MSMg01no089_g01.g1 PHD_FILE: MSMg01no089_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:10 2005
         (308 letters)



>mm_chr3_82070803_82071511
          Length = 709

 Score =  540 bits (279), Expect = e-158
 Identities = 300/307 (97%), Gaps = 1/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccc-acctcctgcttttggttttgttttgtttttgcttttcaagctcttaagatgta 59
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttcccaacctcctgcttttggttttgttttgtttttgcttttcaagctcttaagatgta 448

                                                                       
Query: 60  tcatttattaatttgtttgagttctctctaattttaaaaatgtaggtgcttaatatttct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcatttattaatttgtttgagttctctctaattttaaaaatgtaggtgcttaatatttct 388

                                                                       
Query: 120 gtgattttgctgactttgtagtgtttgttgtttgtctttagctctgctttttttcctgta 179
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 387 gtgattttgctgactttgtagtgtttgttgtttgtttttagctctgctttttttcctgta 328

                                                                       
Query: 180 gcctcttggtttgctcttcttttcttcagtctgaagaaactctttcagtcgtctctgtag 239
           ||||||| ||||||| |||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 327 gcctcttagtttgcttttcttttcttcagtctgaagagtctctttcagtcgtctctgtag 268

                                                                       
Query: 240 ggcttcattggtttggtggtatttataaaatcttatttctccttccagatatttttgata 299
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggattcattggtttggtggtatttataaaatcttatttctccttccagatatttttgata 208

                  
Query: 300 tgcatag 306
           |||||||
Sbjct: 207 tgcatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 709
Length adjustment: 9
Effective length of query: 299
Effective length of database: 700
Effective search space:   209300
Effective search space used:   209300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)