Query= MSMg01no089_k22.b1 MSMg01no089_k22.b1 CHROMAT_FILE:
MSMg01no089_k22.b1 PHD_FILE: MSMg01no089_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:34 2005
(303 letters)
>mm_chr3_6218634_6219336
Length = 703
Score = 551 bits (285), Expect = e-161
Identities = 297/301 (98%)
Strand = Plus / Plus
Query: 1 gccctaagatctactttaaggctctaactctctcttgaattagtcacatggtgaggtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccctaagatctactttaaggctctaactctctcttgaattagtcacatggtgaggtttc 260
Query: 61 agggcattggattcattaacttctagaatcatttaatcttagaatgcactgatattaaac 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggcattggattgattaacttctagaatcatttaatcttagaatgcactgatattaaac 320
Query: 121 tgtgtgaaagtggagctattcaaccttacgatcactgtacaggatgttttgaaactttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtgaaagtggagctattcaaccttacgatcactgtacaggatgttttgaaactttca 380
Query: 181 ctctttgtgcgcaaataatggactcccattttagagcaagagccgtcttgaagtcccatt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ctctttgtgcgcaaataatggactcccattttagagcaagagccatcttgaagtcccatt 440
Query: 241 ctctatctcaaaaaaatgtctttcggcctataagataaatgcttggttatcatccttcct 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 441 ctctatctcaaaaaaatgtctttcggtctataagataaatgcttggttatcagccttcct 500
Query: 301 a 301
|
Sbjct: 501 a 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space: 204036
Effective search space used: 204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_k22.g1 MSMg01no089_k22.g1 CHROMAT_FILE:
MSMg01no089_k22.g1 PHD_FILE: MSMg01no089_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:34 2005
(483 letters)
>mm_chr3_6395318_6396200
Length = 883
Score = 857 bits (443), Expect = 0.0
Identities = 473/483 (97%)
Strand = Plus / Minus
Query: 1 tatgcccacatccacaagtagaaggaagataaacccactaggtttagcttcacttttgaa 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 852 tatgcccacatccacaagtagaaggaagagaaacccactaggtttagcttcacttttgaa 793
Query: 61 tcctcaaagcccaccaccagaaaagcactttctcccacaagcccatatttcttaatcctt 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 792 tcctcaaagcccaccaccagaaaagcactttctcccacaagcccatgtttcttaatcctt 733
Query: 121 ctcaagcagtgccaatccctggtgactgaacactcacatatatgagcctatgggagccat 180
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 732 ctcaagcagtgccaattcctggtgactgaacactcacatatatgagcatatgggagccat 673
Query: 181 tcttattccagttaccaggaatagtgaatataaaagtgaaattaatagattcagataata 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 672 tcttattccagttaccaggaatagtgaatataaaagtgaaattaataaattcagataata 613
Query: 241 tgttgaaaccaaatatataaaggagaggaaatttatatactgatataatgtagcaatagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgttgaaaccaaatatataaaggagaggaaatttatatactgatataatgtagcaatagt 553
Query: 301 taaatggtatgatttctaccaatgaacgatacatcaaagaacaatataaaattttaattt 360
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 552 taaatggtatgatttctaccaatgaacgatacatcgaagaacgatataaaattttaattt 493
Query: 361 acataaatctatttaagtaagattttacatattagcgttaatctgtatttagcaatgtta 420
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 492 atataaatctatttaagtaagattttacatattagtgttaatctgtatttagcaatgtta 433
Query: 421 tatgtagatttttagataatgtgtgtatatatatgtagatagatagacagatagatagat 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 432 tatgtagatttttagataatgtgtgtatatatatgtagatagatagatagatagatagat 373
Query: 481 aga 483
|||
Sbjct: 372 aga 370
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
