BAC Information

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BAC

Clone NameMSMg01-089L12
Chromosome3 (Build37)
Map Location 62,146,839 - 62,147,154
singlet/doubletsinglet
Overlap gene4631416L12Rik
Upstream geneRap2b, LOC666891, LOC669910, LOC676965
Downstream geneDhx36, Gpr149, LOC676984, LOC666967, Mme
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089L12.T7 (MSMg01no089_l12.b1)MSMg01-089L12.TJ (MSMg01no089_l12.g1)
ACCAG308143AG308144
length672693
length of high quality
(start - end)
326 (12 - 337)386 (73 - 458)
definitionCHROMAT_FILE: MSMg01no089_l12.b1 PHD_FILE: MSMg01no089_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:37 2005CHROMAT_FILE: MSMg01no089_l12.g1 PHD_FILE: MSMg01no089_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCATATGGGAGAGGATCCGCGGAATTCAGGATTCTTAACTGGTAATG
GCCTACAAGAGTGCACGTTTAAAAGCAGTGTGGTGCCAGGTTCTGGACGC
TTTTAATCATCAGTTGAGTGACAGGGATGCATCCTTAAGCCCTGTCCCAG
GTGACAGAAATGAGAGCCCATTCTTTGTGGGAATGACCGGGAAACGGTGT
CAATGATGTTATACATATGCTGTGTTCCTCCCCCAGAAACTACTTTGAAA
CTTCCCAGAAACTGAGTTTGAGTTCCTTATTTCCATATGTAATCACAGAA
TAGTAAAGTCATGCATACATTCTAATGCTACCGTATTTTTTTACACACCC
CCCCATCTGTGGTTGCCAAGAGAAAATGCTGAGGCAGGACAGCATTTTTA
ACAAACCAAGTCCTACACCGAACTCGGAATCTTCTGTACCTATGCCACAA
TTGCTTCTGATGTTCCTATCTCCTGCTTTCTGTCTGTACAACTGGAGGGT
TTTGAAAGCTTACCCTGCTTCTCTCTATTCCCACTTCCAGTTTGCTGACA
GTCCATGCTACGATGGGGAAGCTCAGGTCTCTCTTACCTTACTTACCTTT
GACTACTCCCCTGGCATCCATTGTCGTCCTAATTACTCCCCTTGTGCCTT
AAGTGTTCGCCTACCCCACTGA
CATTGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAATCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTTTATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA
GTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGC
AATTCCTCTCCTGGGCATATATCCAGAAGATGCCCCAACGGGTAAGAAGG
ACACATGCTCCACTATGTTCATTGCAGTCTTATTTATAATAGCCAGAAGC
TGGAGAGAACCCAGATGCCCTGCAACAGAGTAATGGATACAGAAAATGTG
GTACATTTACACAATGGAGTACCTACTCAGCTAATAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGCATGAACCTGGAGGGCATCATCCTGAGTGA
TGTAACACATTCCCAAAGAAACTCACACAATATGTACTCACTGATAAATG
GATATTAACCCCCACCCCTAGAAACCCTATATATACGATACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_l12.b1 MSMg01no089_l12.b1 CHROMAT_FILE:
MSMg01no089_l12.b1 PHD_FILE: MSMg01no089_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:37 2005
         (326 letters)



>mm_chr3_62146626_62147356
          Length = 731

 Score =  505 bits (261), Expect = e-147
 Identities = 301/317 (94%), Gaps = 7/317 (2%)
 Strand = Plus / Plus

                                                                       
Query: 14  gaattcaggattcttaactggtaatggcctacaagagtgcacgtttaaaagcagtgtggt 73
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 214 gaattcaggattcttaactggtaatggcctacaagagtgcatgtttaaaagcagtgtggt 273

                                                                       
Query: 74  gccaggttctggacgcttttaatcatcagttgagtgacagggatgcatccttaagccctg 133
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gccaggttctggatggttttaatcatcagttgagtgacagggatgcatccttaagccctg 333

                                                                       
Query: 134 tcccaggtgacagaaatgagagcccattctttgtgggaatgaccgggaaacg-gtgtcaa 192
           |||||||||| | ||| |||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 334 tcccaggtgagacaaacgagagcccattctttgtgggaatgactgggaaa-gagtgtcaa 392

                                                                       
Query: 193 tgatgttatacatatgctgtgttcctcccccagaaactactttgaaacttcccagaaact 252
           |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 393 tgatgttatacatatgctgtgttcctccccgagaaaatactttgaaacttcccagaaact 452

                                                                       
Query: 253 gagtttgagttccttatttccatatgta-----atcacagaatagtaaagtcatgcatac 307
           ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||
Sbjct: 453 gagtttgagttccttatttccatatgtagagtaatcacagaatagtaaagtcatgcatac 512

                            
Query: 308 attctaatgctaccgta 324
           |||||||||||||||||
Sbjct: 513 attctaatgctaccgta 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 731
Length adjustment: 9
Effective length of query: 317
Effective length of database: 722
Effective search space:   228874
Effective search space used:   228874
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)