BAC Information

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BAC

Clone NameMSMg01-089O10
Chromosome3 (Build37)
Map Location 127,801,014 - 127,801,296
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneEG668828, LOC100043393, EG668831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089O10.T7 (MSMg01no089_o10.b1)MSMg01-089O10.TJ (MSMg01no089_o10.g1)
ACCAG308274AG308275
length667686
length of high quality
(start - end)
287 (31 - 317)286 (57 - 342)
definitionCHROMAT_FILE: MSMg01no089_o10.b1 PHD_FILE: MSMg01no089_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:53 2005CHROMAT_FILE: MSMg01no089_o10.g1 PHD_FILE: MSMg01no089_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGATCCGCGGAATTCTCATTGTCTCAATACAGCTTTAAGTCAAACAGTC
GCCTGCCAGTATCTGTGGGGGATTAGTATAAAATCTCTTCTTAGTAACCT
GTGGATGCTCAGGACCCCTCTAGAACACACAGTGCCCTTGTGTGTTTCTC
ACAGACATCTCCCACATATTGTGTTGTCTCTACATTACCTACGGTTATCC
ACAACGCAAATATATCGCTGTCATGTAGTATTGTTTAGGGAACAACGAGG
GTAACCAATCTGTATGTACCATAAGGACACAGACGTTGCAGGCCCAAATA
CAATCTACAAGCAGGAGTGTTTTTGTATCTCACACCACCGCTGGGGAGAG
ACCAACTCTGTGACAGCATGGGCTACCCTGGGCTTTACTTATGCTGATGA
AGTACAGGGTCCTTAGAAGTCAAGTCTAGCTCTTAGAACTTTCTGGCTTT
GTAAACAGATAATATTTCATTCTGCACTTGGTTGGCTCATACATACTGAA
AGCGACTACATGAATATTTGCTACTCCATAACGGATATTTAGCTTTTGTT
CATGCCCTCCCAATAAACCAAACCATTGTTCTCTAATCATTCACGCCATC
TACACTTCCCACCGAATGTGCTACGCTTATTTCTCCTTGAAATATCCAAT
GGTACTCATTGTGATCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCCATGCATTATTGCCTTAATTCTCACAATGATATTACCCATCACA
TCAATATTTCCCCCTCAGATTAGACACTAACACTAAGAAAGTCTGACTTG
CTGAAATACTAAATTGAGAAGCAGATGTGATGTTGTGATCTTGGTGGTCT
GACCCTTGTTGCTAAGGAATAAGAAAGAAAAGGAGCCTATGGTTAAAGTC
ATGAGCATAAGGTAAAAAAAAAAATGTCAGATGAAAATTATGTGCCATGT
TAAAAGAAAATAATTACTTAGAGTTTATTATGATTTCTGGTTTAGCCCCT
CACACGACCAGCAATACCAACAACCCAGAAGATGCACCATTTGTCCTAGC
TCTGAATTCTTATGGACATCATGAAAATAAAAAAGGAGTGTCTAGGATAT
AAACAAAATACTTAATACAAACAATCATTTTTTCCTACTGTCCGTAAGTA
CACATGGGACATAATACCAGAGCCAAGCACAAAATCAGCACATTTTAATG
TTCCTGAGAAATATTATCCATGTGTGCCTCTCCCGTGGCGCATACTGTCT
CTGCTAGATGCTTCATCTCCTCGTGCTACCATGTATTGTTTCAGCTAGTT
CATGTCCCTTTACACCAAGTACTGATTTGTTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_o10.g1 MSMg01no089_o10.g1 CHROMAT_FILE:
MSMg01no089_o10.g1 PHD_FILE: MSMg01no089_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:53 2005
         (286 letters)



>mm_chr3_127800814_127801498
          Length = 685

 Score =  464 bits (240), Expect = e-135
 Identities = 273/284 (96%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcattattgccttaattctcacaatgatattacccatcacatcaatatttccccctc 60
           |||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||
Sbjct: 483 catgcattattgccttaattctcacaatgacattacccagcacatcgatatttccccctc 424

                                                                       
Query: 61  agattagacactaacactaagaaagtctgacttgctgaaatactaaattgagaagcagat 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 423 agattagacactaacactaagaaagtctgacttgctgaaatactgaattgagaagcagat 364

                                                                       
Query: 121 gtgatgttgtgatcttggtggtctgacccttgttgctaaggaataagaaagaaaaggagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtgatgttgtgatcttggtggtctgacccttgttgctaaggaataagaaagaaaaggagc 304

                                                                       
Query: 181 ctatggttaaagtcatgagcataaggtaaaaaaaaaaatgtcagatgaaaattatgtgcc 240
           ||||||||||||||||||||||||| | ||||||||| |||||| |||||||||||||||
Sbjct: 303 ctatggttaaagtcatgagcataagtttaaaaaaaaa-tgtcagctgaaaattatgtgcc 245

                                                       
Query: 241 atgttaaaagaaaataattacttagagtttattatgatttctgg 284
           |||  |||||||||||||||||||||||||||||||| ||||||
Sbjct: 244 atggcaaaagaaaataattacttagagtttattatgacttctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space:   187252
Effective search space used:   187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)