BAC Information

Click to search

BAC

Clone NameMSMg01-089P22
Chromosome3 (Build37)
Map Location 30,191,409 - 30,191,797
singlet/doubletsinglet
Overlap geneMds1
Upstream gene6130401L20Rik, LOC100040676, Evi1
Downstream geneLOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089P22.T7 (MSMg01no089_p22.b1)MSMg01-089P22.TJ (MSMg01no089_p22.g1)
ACCAG308344AG308345
length723797
length of high quality
(start - end)		397 (45 - 441)81 (76 - 156)
definitionCHROMAT_FILE: MSMg01no089_p22.b1 PHD_FILE: MSMg01no089_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:00 2005CHROMAT_FILE: MSMg01no089_p22.g1 PHD_FILE: MSMg01no089_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTAACCTATACGGCAGGAGTATGTACTGAAAGGGGAGCTGGAAT
GACCATGAGAGCTCCAAGGGGCCCAGGCAGGCATGCACTCCGCCTGGCCT
AGAGGTAAGCTAGCTCTCCCCGTGTAGAACTTTCATCTCTGATGCAGTGT
GACCTGACTCACATGCCCACTGCAGTAAGATTTCATAGTCAGTGAAGACT
CACAAGCTTAGGACCTCTACCCAACAACAGCCCTTGGTGGTTTGGGTAAC
TGTTTTAGTTTATTCTCGTTTAAAGCACTGGGAACCATCATGAGCTTGCT
ACACATTCACTGACATATACTCATAAAAAAATTGCCTATGTCACCAAACC
CAAGAGCTCTGGTTGTTTTGCCTTGTTTTGTTTTGTTTGTTTTGGCTTGA
CTTCTCTCCTCCTTATTCCCCCCTCCTCTCTCTCTACCACCCTCCTCTTC
CCCTTTACTCTCCCATCTATCACCTCTTATTATTCCTCTCACTCTCCTCA
CTCTCTCTTTCCTCTAATCTTTTATACTTCCTCTCCCTTTTCTTCCCCAT
CCCTCACTCTGTCCCCCTCTTTCCCTCCCCCTTCCTCTCTCTCCTTCTCC
CTTCCCCTTTCCCCCCTCCATCTCCTCTCCCTCCCTTTCTCTCTTCCTCA
CCCGTCTTACTACCTTTCCCTCC

CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGAGATTTGCCTGCCTCTGCCTCCC
AAGTGCTGAAATTAAAGCATGTCTCACTATCTAACCATGCCCAGTTTAAA
TTGCCAGTGTGTGTGTGTGTGTGTGTTAAAATAAGAGACAGTGCAGGGAG
GGAGGCAGTACAGGAGCGCACGCCCCCCCCCCCCCTCCCCCCTCCCCCCC
TTCCTCCTCTTCCCCCCTCCCCCTTTCTCTCTTCTTCTCCCCCCTTCCCC
TCTCCTCCCTCCACCCTCCCTTTCCCCCTCCCCTCTTTCTCCTCTCTCCC
CCTCACCCCCTCTCCCCCCCCTCCCTCTTCTTTTCCTCCCCCCCCCCTCC
TCCCCTCTTTTCTCCTCTTCCCCCTCTCTCCCCCTCCCCCTCCCCCCCCC
CCTTCTTCTCCTCCTCTCCCCCTCCTTCCCCTTCCCCTCCCCTTCCCCCC
TCCCCCCCCTCCCCCCCCTTCTATCCCCCCCCCCCTCCCCCTCCTCCTCC
CTCTCCCCCCCCCCCCCCTTCCCCTCCACCCCTCCTCCCCTTTCCTCCTT
TCTCCTCTCTTTCCCCCCCCCTCCTCTCTTCCCCCTCCCTCCTCCCTCCC
CCCCTTCTTCTCCCCTCCTCTCTTTCTCTTTCTTCTCCCCCTCCCTCCCT
CCCTCTCCCCCCCTCCCCCCCCCCTCCTCCCCCCTTCTACCTCCCTTATC
CCCTCTCCCCCCCTCTCTCCCCCCCTCTCCTTCCTACCCTTCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_p22.b1 MSMg01no089_p22.b1 CHROMAT_FILE:
MSMg01no089_p22.b1 PHD_FILE: MSMg01no089_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:00 2005
         (397 letters)



>mm_chr3_30191205_30192000
          Length = 796

 Score =  654 bits (338), Expect = 0.0
 Identities = 378/392 (96%), Gaps = 5/392 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtaacctatacggcaggagtatgtactgaaaggggagctggaatgaccatga 64
           |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtaacctagagggcagaagtatgtactgaaaggggagctggaatgaccatga 264

                                                                       
Query: 65  gagctccaaggggcccaggcaggcatgcactccgcctggcctagaggtaagctagctctc 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 gagctccaaggggcccaggcaggcatgcactcggcctggcctagaggtaagctagctctc 324

                                                                       
Query: 125 cccgtgtagaactttcatctctgatgcagtgtgacctgactcacatgcccactgcagtaa 184
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccgtgtagagctttcatctctgatgcagtgtgacctgactcacatgcccactgcagtaa 384

                                                                       
Query: 185 gatttcatagtcagtgaagactcacaagcttaggacctctacccaacaacagcccttggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatttcatagtcagtgaagactcacaagcttaggacctctacccaacaacagcccttggt 444

                                                                       
Query: 245 ggtttgggtaactgttttagtttattctcgtttaaagcactgggaaccatcatgagcttg 304
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 ggtttgggtaactggtttagtttattctcgtttaaagcactgggaaccgtcatgagcttg 504

                                                                       
Query: 305 ctacacattcactgacatatactcataaaaaaattgcctatgtcaccaaacccaagagct 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 ctacacattcactgacatatactcataaaaaa-ttgcctatgtcaccaaacccaagagct 563

                                           
Query: 365 ctggttg--ttttgccttgttttgttttgttt 394
           |||||||  |||||  |||||| |||||||||
Sbjct: 564 ctggttggtttttgt-ttgttt-gttttgttt 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 796
Length adjustment: 9
Effective length of query: 388
Effective length of database: 787
Effective search space:   305356
Effective search space used:   305356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |