BAC Information

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BAC

Clone NameMSMg01-090F12
Chromosome3 (Build37)
Map Location 6,818,635 - 6,818,951
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090F12.T7 (MSMg01no090_f12.b1)MSMg01-090F12.TJ (MSMg01no090_f12.g1)
ACCAG308602AG308603
length687707
length of high quality
(start - end)
322 (46 - 367)295 (78 - 372)
definitionCHROMAT_FILE: MSMg01no090_f12.b1 PHD_FILE: MSMg01no090_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:28 2005CHROMAT_FILE: MSMg01no090_f12.g1 PHD_FILE: MSMg01no090_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTACACCTACCTTGACTAGGCATGAACTTTTTAAAGTGTTGCA
ATCAAAGCTTAAAAGTCTAAGTGCCATTCTACTATATGTAACAACTCTAT
GGATTCTATAATTAAAATGATGTCAGATTCATATCTGTAGGTGGAGGGGC
AATTTATTTTGTTTCCATGACAAGTGATGGTATCAGGGTTATTTATAAAA
TTATTACAAGATATATAATATATTACATTACATATTATATATGTATATAT
TATATAGAGAAAATTATATAATATAAAATATTTTAAAATATAATAATGAG
GGAGACATGTACTGTTATCCAAACTCCAAGATTCTGTCCAAAAGCTACTC
AGACTTACTCAGGAAATTCTAGAATATAAGATATAAACTACCACCATGCA
TTATAAAAATAAATGTAAAATGGCACAAAAGAAAACCTTATTTTAATATG
CTTTAATACATCTGAGAACAATAACACACTGAATATTCTGAAGTGGTTTT
GTGACATTAAATGGCCAAACTGCAGTTACAGCTTGAAATTAAGGTTGTGG
TTGCATTAGGTGAAAAACATAAAGCAAATTACTCACAATTACAGAGGAAA
GGACACTGTAGGAGACAGGAAATGGTATCAGGTCAAA
NCCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAATTAGGTAGGAAAAAATGA
AGCTATACACTGAATATACATTAAATACCGGAGATAGCAGAAAATAAAGT
GAGAGAAAGGAAGAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAGGGAAGAAAGGAAGGGAAGAAGGAAG
GAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAGAGAGAAA
GAGAGAGAGAGGACAGAGAAAGAGAGAGGGACAGAGAAGAAGAAGAAGAA
GAAAACAGGGAATGAAATGATTTAAATATGGATGCAATCAAGATATGGCA
GGTGTTGACCAAAATAAGGGATGTGCAAAGGAGGCATATGAAACCATATT
ATCCTGTTACTCACTTTACAAAGTTAAAAAATAGAGATTGAAGAAAGATT
ACCTGCATGGGTAGATAATGTTGTTCCTGTTAATAATGAATTTTTAACCA
AATTCCCAATGCAGATTTTGGGAAGCCTTGTAAAAGATTTGAGTTAGGGA
AGTGCCTAGACTCCCTGGACCATTCCGTGTTAACCACCAAAATCTTGATA
TAGGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_f12.b1 MSMg01no090_f12.b1 CHROMAT_FILE:
MSMg01no090_f12.b1 PHD_FILE: MSMg01no090_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:28 2005
         (322 letters)



>mm_chr3_6818553_6819275
          Length = 723

 Score =  567 bits (293), Expect = e-166
 Identities = 311/317 (98%), Gaps = 1/317 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttac-acctaccttgactaggcatgaactttttaaagtgttgcaatcaaag 62
           ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggaatacttttacaacctaccttgactaggcatgaactttttaaagtgttgcaatcaaag 340

                                                                       
Query: 63  cttaaaagtctaagtgccattctactatatgtaacaactctatggattctataattaaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cttaaaagtctaagtgccattctactatatgtaacaactctatggattctataattaaaa 280

                                                                       
Query: 123 tgatgtcagattcatatctgtaggtggaggggcaatttattttgtttccatgacaagtga 182
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 279 tgatgtcaggttcatatctgtaggtggaggggcaatttattttgtttccctgacaagtga 220

                                                                       
Query: 183 tggtatcagggttatttataaaattattacaagatatataatatattacattacatatta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tggtatcagggttatttataaaattattacaagatatataatatattacattacatatta 160

                                                                       
Query: 243 tatatgtatatattatatagagaaaattatataatataaaatattttaaaatataataat 302
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 159 tatatgtatatactatatagagaaaattatataatataaaatactttaaaatataataat 100

                            
Query: 303 gagggagacatgtactg 319
           |||||||||||||||||
Sbjct: 99  gagggagacatgtactg 83


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 723
Length adjustment: 9
Effective length of query: 313
Effective length of database: 714
Effective search space:   223482
Effective search space used:   223482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)