BAC Information

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BAC

Clone NameMSMg01-090G13
Chromosome3 (Build37)
Map Location 50,123,233 - 50,123,542
singlet/doubletsinglet
Overlap genenone
Upstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469
Downstream geneSlc7a11, EG621304, LOC100039667, Ccrn4l, Elf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090G13.T7 (MSMg01no090_g13.b1)MSMg01-090G13.TJ (MSMg01no090_g13.g1)
ACCAG308648AG308649
length695701
length of high quality
(start - end)
315 (39 - 353)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no090_g13.b1 PHD_FILE: MSMg01no090_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:33 2005CHROMAT_FILE: MSMg01no090_g13.g1 PHD_FILE: MSMg01no090_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CACATACTTGAAGTCCAGCTTTCACCGTGTAAAAAAAGGAATGCCAAGGG
CTGTGAAGGAAGCTGTATGTAGAGTGTGGAAGCTGTATGCAGAGTGTGTC
ATGCAGGCCTTCACACACTAGCACCAGAATAAGGAAGCTATTGCACACTC
TGATGCTACCTCAGAGTCCTCAGATCTCTGAGCAGGGCTTGGGAGAAAGA
GGACTGGTAGAGAGCAGGGAAATTGGTAGGGGCATCTCTGAGACAAGCTG
AAGACCTGGGGCAGAGGAGGCTCCTGAGGTATGGGGATGACCATAGATGG
ATGAGTCTCTTCACACACGACGGGTATGGATCCTGAAATGGCCACCTCTG
GTAGCCAGGCAGGACTTTCAGTGAAGGAAAATGAGGCATCAACCCACCCA
CAAAACTGTTGACCCAAAATTTGCCCTGCATACAGGATGCACAGGGTAAC
AATGAGGCAGTAATTGGGGGAATTGCCAACCAATGACTAATCAACTTGAG
ATCTACCCCATGGGAGAGAGCCAACCTCTGACACTATAAATGATACTTTG
ATATGCTTGCAGAGCCGTCATTTGAGGGGCTTCATCTGGCCTCAGAAAGT
AACTGACGCTGAGACTCACTTTCTTCCATCTGCCCTTAGTTCGGA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTCAGATCAACATTCAGGGCCCATAA
TCAACGGAGAGACACTCCATCAGCAGGGAGGTGAAGACAGAGCCAGTTCC
CCCACCAAAGCTGTGGAAAACCAAGAAGCCCTGGAGATCCGTGCACTGGT
CAGCCAGCTTATGAATCCTGTCCAGGACAAGGTCAATGACCTCCTTGCCA
GTGGTGTAGCGGCCACGGGCATAGTTATTGGCAGCATCCTCCTTGCCTGT
GATGAGCTGCTCAGGGTGGAAGAGCTGGCAGTAGGTGTCAGTGAGAACTT
CATTGATGACTGTGGCCTCCAGGCCTATGAACACTGCCTGACGCACATGC
TTGTCATCTCCTGTCTCACTGAAGAAGGTGTTGAAGGAGTCATTTCCTCC
CCCAATGGTCTTGTCACTTGGCATCTGGCCATCAGGCTGGATGCCATGTA
CCAGGCAGTAGAGCTTCCAGTAGGCATTGCTGATCTGGACACCAGCCTGG
ACAACATGGATGGAGATGCACTCACGCATGATATCAATTGCTTAGAGGGT
GAGGGTGAGAGAGAGAAGCAGACACTGGGTCTCGATTACCATTCCCGACA
ACTAAGAGTCGACATAAGTAACGCAATGAGGCCATTAAACAGGTTTTAAA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_g13.b1 MSMg01no090_g13.b1 CHROMAT_FILE:
MSMg01no090_g13.b1 PHD_FILE: MSMg01no090_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:33 2005
         (315 letters)



>mm_chr3_50123027_50123742
          Length = 716

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%), Gaps = 1/310 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattcacatacttgaagtccagctttcaccgtgtaaaaaaagg-aatgccaagggctg 65
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 207 ggaattcacatacttgaagtccagctttcaccgtgtaaaaaaaggcaatgccaagggctg 266

                                                                       
Query: 66  tgaaggaagctgtatgtagagtgtggaagctgtatgcagagtgtgtcatgcaggccttca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgaaggaagctgtatgtagagtgtggaagctgtatgcagagtgtgtcatgcaggccttca 326

                                                                       
Query: 126 cacactagcaccagaataaggaagctattgcacactctgatgctacctcagagtcctcag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacactagcaccagaataaggaagctattgcacactctgatgctacctcagagtcctcag 386

                                                                       
Query: 186 atctctgagcagggcttgggagaaagaggactggtagagagcagggaaattggtaggggc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atctctgagcagggcttgggagaaagaggactggtagagagcagggaaattggtaggggc 446

                                                                       
Query: 246 atctctgagacaagctgaagacctggggcagaggaggctcctgaggtatggggatgacca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atctctgagacaagctgaagacctggggcagaggaggctcctgaggtatggggatgacca 506

                     
Query: 306 tagatggatg 315
           ||||||||||
Sbjct: 507 tagatggatg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space:   216342
Effective search space used:   216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)