BAC Information

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BAC

Clone NameMSMg01-090I21
Chromosome3 (Build37)
Map Location 65,364,070 - 65,364,373
singlet/doubletsinglet
Overlap genenone
Upstream gene4930518C23Rik, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp
Downstream geneLOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090I21.T7 (MSMg01no090_i21.b1)MSMg01-090I21.TJ (MSMg01no090_i21.g1)
ACCAG308753AG308754
length782685
length of high quality
(start - end)
315 (125 - 439)239 (60 - 298)
definitionCHROMAT_FILE: MSMg01no090_i21.b1 PHD_FILE: MSMg01no090_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:45 2005CHROMAT_FILE: MSMg01no090_i21.g1 PHD_FILE: MSMg01no090_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAAATAATTNNTATATCTATAAXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTAATCGATTAAAAC
GATTAGGTCAAAGCCTTCAAGATCCAGCTATATCCGGAAAGCGCCTGTCA
GCTGGCAGTCGGGCATCTGACATTTGAGCCTTTTTAGGTGACACTTCATC
TCTAGCCCATAAGATCCTTCCAAGGATCACATTGATGAATATATATATAT
ATATAACCTTCAGAGATGATGGGATATTAAATACACCGTTTGTATTCCTT
GCTTTTTTTTCATTGACAGTTTATCTTAGAGTGCAACTTCATTCTCCTTA
ATGACTGTGACGTGTTTTGTTGTATGAATGCTTCATGTTTTACTTCCCCC
CCCCCCACTTTCAAGTTGTTGCTAGTGCTGTCAACCACAAACTGCGCTGA
AAAATCTCCTTGAGCATGTTCTATATTGACAGAACAAGCTCCTAGAAGTG
GGGTTGTTAAGTCAAAGGATAAAACATTATTCTAACTTTGGGCACATACT
ATGTCACTTACCTTAGAGATTGAATCAATGCGTCAGCATCCCTCCAGATG
CCTTCTTTGCATTTTATTTATAATAAGAGTACAATGGTCTCTTAAACGAT
CTCTCCCTGTGAGAGTGAGTGAGAGATGTTCTGAAATCTTGCCTTACTCT
TTATTATATTTTCTTACTACCAATTATCTCAC
GGCGGCCGCCTGTTTCAAAACTTCAGGTGACCTATAGAAGTTACAACAAA
ATTCACTGGCACAGGAAAAGACTTTCTGAACAGACCACCAGTAGCACAGG
CACTAATATAAACCACTAATAGATGAGACCTCATGAAACTGAAAAGCATT
GGTATGGTAAAGACACCATCATTCGAACAAAGTGTCAGTCTACAGAAAAA
AAGAATTTTACAAATTATACATCCAATAGAGGTTTAGTATCTGAACTATA
ACAAGAACTAAAACCAACCAAACAAAAAACACTGAACAACAAGAAAATTT
ACTACTTCTGCTAAAAGTAGATTAGAGATTAAGTAGAGAGTTTTTTTAAC
CACCCCCACACCTGGCAAAGAAACATTAAACATGTATTCAAGATCTTTGC
CATCAAAGAAATAAAAGTAACAGCTACTTTGAAATTTCATCAATTTACAC
CAATCAGAATGGACACAATCTATAAAACAAATAACAGCTCATGCTGGTGA
GGCTATGGGGTACAGGAACAATCATCCAATGCTGGTGAGATTGCAAACAT
GTGCAACCACAATGAAAATCAGGGTGGCTGTTTCTCAGGAAGCTGGGAAT
TCATCTTCCTTCAGATCAAACTACTCTTGGGCATATATCCATTTAATTTC
TCAGTCAGTCACAGAAAGGCCTGCTCATCCATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_i21.b1 MSMg01no090_i21.b1 CHROMAT_FILE:
MSMg01no090_i21.b1 PHD_FILE: MSMg01no090_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:45 2005
         (315 letters)



>mm_chr3_65363866_65364575
          Length = 710

 Score =  532 bits (275), Expect = e-155
 Identities = 299/309 (96%), Gaps = 5/309 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactaatcgattaaaacgattaggtcaaagccttcaagatccagctatatccgga 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcactaatcgattaaaacgattaggtcaaagccttcaagatccagccatatccgga 264

                                                                       
Query: 65  aagcgcctgtcagctggcagtcgggcatctgacatttgagcctttttaggtgacacttca 124
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagcacctgtcagctggcagtcaggcatctgacatttgagcctttttaggtgacacttca 324

                                                                       
Query: 125 tctctagcccataagatccttccaaggatcacattgatgaatatatatatatatataacc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||
Sbjct: 325 tctctagcccataagatccttccaaggatcacattgatgaatatatatatata----acc 380

                                                                       
Query: 185 ttcagagatgatgggatattaaatacaccgtttgtattccttgcttttttttcattgaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 ttcagagatgatgggatattaaatacaccgtttgtattccttgcttttttt-cattgaca 439

                                                                       
Query: 245 gtttatcttagagtgcaacttcattctccttaatgactgtgacgtgttttgttgtatgaa 304
           ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 440 gtttatcttagagtgcaacttcattctccttaatgacagtgacgtgttctgttgtatgaa 499

                    
Query: 305 tgcttcatg 313
           |||||||||
Sbjct: 500 tgcttcatg 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 710
Length adjustment: 9
Effective length of query: 306
Effective length of database: 701
Effective search space:   214506
Effective search space used:   214506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)