BAC Information

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BAC

Clone NameMSMg01-091F22
Chromosome3 (Build37)
Map Location 17,136,662 - 17,137,104
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936
Downstream geneLOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091F22.T7 (MSMg01no091_f22.b1)MSMg01-091F22.TJ (MSMg01no091_f22.g1)
ACCAG309339AG309340
length749754
length of high quality
(start - end)
446 (32 - 477)306 (128 - 433)
definitionCHROMAT_FILE: MSMg01no091_f22.b1 PHD_FILE: MSMg01no091_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:51 2005CHROMAT_FILE: MSMg01no091_f22.g1 PHD_FILE: MSMg01no091_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAAACGACTCCTATAGTTCGAGATCCGCGGAATTCTATCTAGC
TTATCCAAAAAACAAAGAAAATAAAAATCATAAACCTTGCAGGTTAATCA
GTAAAACATTTTCTTTCTTGTTTTGTTCTGATAGCCTTCTTGTCTTACAG
AAGACAGCCTTTCAGTGCAGCTTCTCAGGCATGATTCCATACAACCTTTG
AATTCACTGTCTTTATACTGTATATGTTTCAAACCATGACACAATCAGAA
GGGATCTTCGAAGGCCTACAGCTTTATGCATCCACACAGTTTCAATCATT
GCAAACATTCCTTTTTCCTTGGGCAAACCCTTCCTGCCAATCTGAAGACA
ACCTTTTCTGGAGGAGAAGAGAGCTTGCTTCCATTTCTGACTCACTCAAG
GTGAAACAGAAATGTTTCTCTTTTATCTTCTATTTCTATATTTCATTTTT
ATTTTTCTTTATGTATCACAACAAAACCACAGCACACTAAATATTATTCC
TAAACCCACAGAAAACTAAAGATCTTAGCACATAACAAGGAAACTTCTCT
TTCCAACAGGAAGAGGTCATTACAAAAGTCCTAACTGAATGAACTGGAGA
AAACAAGTGTTTATGCAGTCCCCGCTTTAAGTGATAACTGTATAAACCAC
CTCCTTGCATCTTACGTTTAACGAATTCACCACAAAAAAAGGCAAAAATA
TTTTTACAACTTCCAGCACCCTAATAAGTTTTGGAAACTGAATCCCCCT
CATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACTTTTAGTTCTCTACCCCATTTTTAATGGG
GTTATTTGATTTTCTGGATATCTGCTTCTTGAGTTCTTGGTATTATTGGA
TATTAGTCCCATATCAAATTTAGGATTGGTAAAGATCCTTTCCCAATCTG
TTGTTGGCCTTTTTGTCTTATTGACAGTATCTTTTGCCTTACAGAAGCTT
TGCAATTTTATGAGGTCCCATTTGTTGGTTCTTGATCTTACAACACAAGG
CATTGGTGTTCTGTTCAGGCATTTTTTTTTGTACCTATATATTCTAGGCT
TTTCCCCACTTTCTCCTCTATAACCTTTAGTGTCTCTGATTTTATGTGGA
GCTCCTTGATCTACTTCAAATTGAGCTTTATACAAGGAGATGAGAATGGA
TCAATTTGCATTCTTCTACATAATAATCGCCAAATGAGCTACCACCATTT
TGTTGAAAATGCTGACTTTTTCCCACTTGATGCTTTTAGCTTCCTTGTCA
AAGATCACGTGACCATAGATATGTGGGTTTATTCCTGGATCTTCAATTAT
AATACATTGATCTATCCTGCTTGCATTGTTTCAGAACAATGCAGTCTTTC
ATCAAAATTGCTCTGTACTACTGCTTTTGTTCCGGCATGGCGATTCCCCT
AAAGTTCCTTCTTAATGTTGGTCTTTTTATCGGGTTCGGCAACCTAAGGT
CTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_f22.b1 MSMg01no091_f22.b1 CHROMAT_FILE:
MSMg01no091_f22.b1 PHD_FILE: MSMg01no091_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:51 2005
         (446 letters)



>mm_chr3_17136458_17137304
          Length = 847

 Score =  760 bits (393), Expect = 0.0
 Identities = 431/447 (96%), Gaps = 9/447 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctatctagc-ttatccaaaaaa----caaagaaaataaaaatcataaaccttgc 59
           ||||||||||||||| |||   ||||||    ||||||||| ||||||||||||||||||
Sbjct: 205 ggaattctatctagcttta---aaaaaaaaaccaaagaaaacaaaaatcataaaccttgc 261

                                                                       
Query: 60  aggttaatcagtaaaacattttctttcttgttttgttctgatagccttcttgtcttacag 119
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgttaatcagtaaaacatttcctttcttgttttgttctgatagccttcttgtcttacag 321

                                                                       
Query: 120 aagacagcctttcagtgcagcttctcaggcatgattccatacaacctttgaattcactgt 179
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 322 aagacagcctctcagtgcagcttctcaggcatgattccatgcaacctttgaattcactgt 381

                                                                       
Query: 180 ctttatactgtatatgtttcaaaccatgacacaatcagaagggatcttcgaaggcctaca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctttatactgtatatgtttcaaaccatgacacaatcagaagggatcttcgaaggcctaca 441

                                                                       
Query: 240 gctttatgcatccacacagtttcaatcattgcaaacattcctttttccttgggcaaaccc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctttatgcatccacacagtttcaatcattgcaaacattcctttttccttgggcaaaccc 501

                                                                       
Query: 300 ttcctgccaatctgaagacaaccttttctggaggagaagagagcttgcttccatttctga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttcctgccaatctgaagacaaccttttctggaggagaagagagcttgcttccatttctga 561

                                                                       
Query: 360 ctcactcaaggtgaaacagaaatgtttctcttttatcttctatttctatatttcattttt 419
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 562 ctcactcaaggtgaaccagaaatgtttctcttttgtcttctatttctatatttcattttt 621

                                      
Query: 420 atttttctttatgtatcacaacaaaac 446
           ||||||||||||||||||||| |||||
Sbjct: 622 atttttctttatgtatcacaa-aaaac 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 847
Length adjustment: 10
Effective length of query: 436
Effective length of database: 837
Effective search space:   364932
Effective search space used:   364932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)