BAC Information

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BAC

Clone NameMSMg01-092F08
Chromosome3 (Build37)
Map Location 113,840,407 - 113,840,518
singlet/doubletsinglet
Overlap geneCol11a1
Upstream geneEG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092F08.T7 (MSMg01no092_f08.b1)MSMg01-092F08.TJ (MSMg01no092_f08.g1)
ACCAG310048AG310049
length659661
length of high quality
(start - end)
---113 (246 - 358)
definitionCHROMAT_FILE: MSMg01no092_f08.b1 PHD_FILE: MSMg01no092_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:09 2005CHROMAT_FILE: MSMg01no092_f08.g1 PHD_FILE: MSMg01no092_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATACGGAGAGGATCCGCGGAATTCTTAGCTGTCACCAGCCTAAA
GTCCAGAGACCTAGTACTTCATGAAAGGACCTCTTTTTTCCCCTTCCATT
TCCTGTTTTCCTACTCCTTCCCCTATCACCAGCCAAGCTCAGACTAACAC
TGTGCTGTAGCATGAATAGCTCAAAGCGACATTAATTATAGTATTTATTT
ACTTTTTGTCTTTTTTGCGAGGCCTGCCTGAAGACTGCGAACTTTGGCTA
GCACGAGTGCCTTGCACATGCGCTAAAATTAATTCCTTTTCTCTGACACA
AGTGATAGCTTAATGATACTAATTTCACTTATTCAAGATATTTGACTCCT
GAGGCACAAATTGGAAATTTTTGCCTGACTCATTGTCGGACATTCTGAGC
AAGAATTTTTACGGCCATATATTTATCATATATTCAGCTGGAGATAAGTG
ATTAAATATACCTTTTGAATTTCAGTATTGTGCCATTTTGTATATACTAT
AAAAACTCTTTTTGTTGTTCACAAATGCTAAAATCGCAGTTGTTTTCAAT
GTTACAGGATGATTATCTTCATGACAAATGTATTACATTTTTCTCAATAT
CCTTGAAGTACATTTACTGTAGAATCTTAATGAATTTTCTTTTTTAAACC
ATGAAGTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAAGACCTTAATTCGTATCTTCTGCTTCCCACAGCACCCAAGTACA
CCAAGGTTAGGTCTTGTACTCTGAGACTGTTTTGCTGTTGCAAGGCAACA
ACTATCTATTAGTACATCTTAATACTTTGAAGTTTGTGGGAGATAAGAAA
AAAAAAGTTCAGCATTCATCAACAAGGAAATGTGGGTTATAAAGTGATAA
TATTATATAATAAACAATGATGGCTGTAGAAATGTAACAAGCCCATAAGT
GCACTTAATATAAATAAAATATGACTATATTTTACTAGTGAAACAGAACT
TAATCCCAATACTAACATCCCTCCATTTCATATTGGGCATATGTCCACAC
ATTTCTCAGAGATTTTGTTTCATCATTATCCAAGCAGGTTTATGTCTTTA
TTATGTACGTAAACACAGAAGATGGAATGTTACAGCTTTTTGCAAAATTT
TGTATCCACTACTCTAAAAATGTGGTATATGTGAGGTGAGAGTTTCCACC
AATCTATGTGTCTGATTTGACCCATTGTATGGAGGAAGTTCGATATGTGT
AAGACGCCTGAGAGAATACCCACCTTTACAATTGTACGCCTCTCCTTGTA
TTTGGGAGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_f08.g1 MSMg01no092_f08.g1 CHROMAT_FILE:
MSMg01no092_f08.g1 PHD_FILE: MSMg01no092_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:09 2005
         (113 letters)



>mm_chr3_113840207_113840718
          Length = 512

 Score =  211 bits (109), Expect = 1e-59
 Identities = 112/113 (99%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataatattatataataaacaatgatggctgtagaaatgtaacaagcccataagtgcact 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 312 gataatattatataataaacaatgatggct-tagaaatgtaacaagcccataagtgcact 254

                                                                
Query: 61  taatataaataaaatatgactatattttactagtgaaacagaacttaatccca 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taatataaataaaatatgactatattttactagtgaaacagaacttaatccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 512
Length adjustment: 8
Effective length of query: 105
Effective length of database: 504
Effective search space:    52920
Effective search space used:    52920
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)