BAC Information

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BAC

Clone NameMSMg01-092K21
Chromosome3 (Build37)
Map Location 79,784,345 - 79,784,606
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041725, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092K21.T7 (MSMg01no092_k21.b1)MSMg01-092K21.TJ (MSMg01no092_k21.g1)
ACCAG310309AG310310
length816862
length of high quality
(start - end)
258 (124 - 381)59 (185 - 243)
definitionCHROMAT_FILE: MSMg01no092_k21.b1 PHD_FILE: MSMg01no092_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:37 2005CHROMAT_FILE: MSMg01no092_k21.g1 PHD_FILE: MSMg01no092_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTCTTTCCCTTTTTTCCCTTCCTCTTCTCTTTCCTTCTTCTTCTGCTC
TCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACCGCGGAAT
TCATTAGGAGAATTTCCCACAGCTTGTGGCAGAGGAAAGAGGTGATGAGT
TAAAACCAAGGTCATCTCTCTTTTTACTGTGAGGATGAGCATGGTCCTCT
GGGACTACGTTGGCCTATCTTGGCTAGCAATAGACAACAGAGGCCTCTGG
AGCTTATACTACATGTATGAAGACTCATGTTTTCAGAACCTTGCCATCTT
TTGCTCTCACAATCTAGCTTGATTCCTCAAGCTTGGGTGACAAGCTTTCA
GGTTCCAGAGTAGTTCATCATGATTATAATGTTGCGCTGGTTTGAATAGG
TTTGCTCCCCCCCCCCCCCTACTATTGCGCTTGAACGCTTGGCTCATGGG
AAGTTGCTCTACTTAGCACCCATGGTCTAGTATTCATACATTCCAAGCAT
TCGCATGTTGCTTTGTCTTTTGCTACTACAAAATTAGCCTGGCTGAGGTC
CGTGTCTGCCACCGCGCTCCAATTTTTTTTCTCCCAAAAGTCATTAGGAA
CTTACACTCCGCTTCCCCCTGTGAACTTAAAGCCCCCGCCTTTTCCGCAT
GCTGTACGTTTTTGCCGGTACTCATCTTTGATCCCCCCTCTCTCTGGGAG
CTTGCTAACCTAGAAACATTAATCCGCTTGTTTCTGTTTTTTTGCTCCAA
CTTACTCCCCTTTTCCCCTCCTGTTTAAACCCTCGCCTTATTTTCCCTTC
CTCTAAATGTTTGTAT
CCTTTTCCCCCNTCCCCTNNTTTTTTTCTTCTNTAACCCNNNNATAACGA
GACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCTCCCAAATCCTTTGTGTGGGTGAACAAA
GGCACAGCATAAGTAATATCTGTCCCCTGTCCACAGAAGCTTTTTCTCAC
AATATTAAGCTTCACAACATCAACAATAAACTATCCTGATAAGCCTTGAC
ACTCTCATTTTTGATTTCCCAACAATGAGTCTGCCTCATCCTTATATGTG
ACCATGCGTTAATACATAATTCCACGATTAAGAACTTTTTGCATTGTCTC
TTATTACTGGTCACAACACGTCTAAAATTCATTTTCAAATATCTTAATCA
TAATTTATGACATTTTTTTTTTCTCCCCCCCCCCCCCTTATTTTTTCTTA
AACTCCACTTCCCACACCCGCTCCCTTATAAAAAAAAAAAAAGATTTGCA
GGCGTGCTCTTTTCCCTCTTACACCCCCCACCCTTTTTTATCTTCAAAGT
ACACCACTTCTCCCTTGTTCCCCCCTTTCTAAAACCCTTCCTCCTGTAAC
TACTATACACTCTAATATAAGCCCCCCATCCTCTAAACAATACTCGCAGC
CCACCCTCAACCTATTAATTCCCTTCTCCTTAATATCACCCTATAACATC
TATTAACCCCCTCAAACCCACCCCTAATAATTGACTATCATAATACACTT
TTCCCCCTTTCTAATTGCTTTTCCCCATACCCCCCGTCTTACCTACCTAT
TATCCCTTTCTTTCCCACTCCATTCCTTTCCTCTATCCCCTAATTCCTTT
ATTTTCCCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_k21.b1 MSMg01no092_k21.b1 CHROMAT_FILE:
MSMg01no092_k21.b1 PHD_FILE: MSMg01no092_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:37 2005
         (258 letters)



>mm_chr3_79784145_79784806
          Length = 662

 Score =  456 bits (236), Expect = e-133
 Identities = 254/262 (96%), Gaps = 4/262 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtggcagaggaaagaggtgatgagttaaaac----caaggtcatctctctttttactg 56
           ||||||||||||||||||||||| |||||||||    |||||||||||||||||||||||
Sbjct: 201 ttgtggcagaggaaagaggtgataagttaaaactaaccaaggtcatctctctttttactg 260

                                                                       
Query: 57  tgaggatgagcatggtcctctgggactacgttggcctatcttggctagcaatagacaaca 116
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaggataagcatggtcctctgggactacgttggcctatcttggctagcaatagacaaca 320

                                                                       
Query: 117 gaggcctctggagcttatactacatgtatgaagactcatgttttcagaaccttgccatct 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcctctggagcttatactacatgtatgaagactcatgttttcagaaccttgccatct 380

                                                                       
Query: 177 tttgctctcacaatctagcttgattcctcaagcttgggtgacaagctttcaggttccaga 236
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tttgctctcacaacctagcttgattcctcaagcctgggtgacaagctttcaggttccaga 440

                                 
Query: 237 gtagttcatcatgattataatg 258
           ||||||||||||||||||||||
Sbjct: 441 gtagttcatcatgattataatg 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 662
Length adjustment: 9
Effective length of query: 249
Effective length of database: 653
Effective search space:   162597
Effective search space used:   162597
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)