BAC Information

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BAC

Clone NameMSMg01-092N17
Chromosome3 (Build37)
Map Location 47,863,123 - 47,918,676
singlet/doubletdoublet
Overlap geneLOC666202
Upstream geneLOC383849, LOC383850, LOC100039426
Downstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092N17.T7 (MSMg01no092_n17.b1)MSMg01-092N17.TJ (MSMg01no092_n17.g1)
ACCAG310445AG310446
length682683
length of high quality
(start - end)		559 (42 - 600)527 (78 - 604)
definitionCHROMAT_FILE: MSMg01no092_n17.b1 PHD_FILE: MSMg01no092_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:51 2005CHROMAT_FILE: MSMg01no092_n17.g1 PHD_FILE: MSMg01no092_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,918,130 - 47,918,676)(47,863,123 - 47,863,649)
sequence
TTCCCCCTCTATAATTGCGGCGCTATACGACTCCTATATCGAGAGGATCC
GCGGAATTCAGTTGCTCACGTTTTTGGTACTCGCTTACCTCTGCTCTGCT
GGGGAGGGGAAGCAGTACCTATGTTTAATTTTGCTTTTCTAGTTTCGCTT
TAGTAAGACCACATGCTTATGGAACAAGGAAGCTCTGGAACTTAGCAGAT
GGGAAACATCTCCTTTACTGCTTTAGTCAGATTGCCTAGAGATTCTTAAC
ACAACTGCATGCAAATTGTCTCAATTTCTGCCTTTTATGCAGGCTGCCTG
GTTCCTTTCAGGGGAAAAAATACCAGTATTATATTAAACACTAAGCATGA
ATATGGGTTGGAATACATTTCCTGAAGATTTAATGCATTTGGATTTTTTT
TGCTGTGGTGGTTTTTTTTTAATTACACTTAAAACTAATTTTGAGTGAAC
TTTAAATTAGAATAATTACTTGATATTAAGCATCTCTTAATTTTGGGAAA
GTGGGAAACTTGCAACTAGAATGATGACTGACCATTTATACTGTCAAAAT
TGAAAATGCTTGATTAAATATTTCTTTTGGAAAGTTTTAAAGTTTTTTTT
TAAATGACCACTCAAATGAATTAAGAATGGCATTAATGAATTGCAAAATA
ACTTACCTCACTTTTCTGTAGGCAAAAGATTT

NCCACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCATTTGCATGCATTTCCA
GATTAATTTTAAACTCAGCTCTGCAGAAAGAACTACTCTCACCATGTTGT
TAGTCAGCACACAGGGCATCTACTTCAAACCTTTCTAAATTTAGCCTTCT
TGCTGGCTCCACTGTACTTACTTTCTACCCTAGATGGCCCTATTCTTGAA
TCAGGATGCTCACTCAGGATGCTCACCTCTGAAGGTCATGCCATGGGACT
CCTGGCCCCTAAGGCTTCCAGTTGAGCTTCAGGAGGGATGAGTCTCAGTG
GGAAACCAGAAGGGTCAAAAAAGGCAGGTTGTAAGAATTTTCTTCTAACT
GCAGCTCAGGAAGGTCACAAAGGTTGGCTATGCTATTGGACTGACAATGA
CAAAATTCCAGAGCACTGTACAACTAGCTGAACTTTAGACTCGGCTTTGT
CTGTTACACTCCAATCACCTAGGAATATGCATAAAAACATAAATTTTCAC
TGCACCTGATTCAATCTTTTATAATGAATTCCAATGTAACTGAAACCTCT
CCAACTAGTCATATATATGTATATATACATACCCACATATACATACATAT
GTGTGTATACCCACCCACACCCCCCCATATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_n17.b1 MSMg01no092_n17.b1 CHROMAT_FILE:
MSMg01no092_n17.b1 PHD_FILE: MSMg01no092_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:51 2005
         (559 letters)



>mm_chr3_47917918_47918876
          Length = 959

 Score = 1050 bits (543), Expect = 0.0
 Identities = 546/547 (99%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattcagttgctcacgtttttggtactcgcttacctctgctctgctggggaggggaagc 72
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gaattcagttgcacacgtttttggtactcgcttacctctgctctgctggggaggggaagc 700

                                                                       
Query: 73  agtacctatgtttaattttgcttttctagtttcgctttagtaagaccacatgcttatgga 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agtacctatgtttaattttgcttttctagtttcgctttagtaagaccacatgcttatgga 640

                                                                       
Query: 133 acaaggaagctctggaacttagcagatgggaaacatctcctttactgctttagtcagatt 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 acaaggaagctctggaacttagcagatgggaaacatctcctttactgctttagtcagatt 580

                                                                       
Query: 193 gcctagagattcttaacacaactgcatgcaaattgtctcaatttctgccttttatgcagg 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gcctagagattcttaacacaactgcatgcaaattgtctcaatttctgccttttatgcagg 520

                                                                       
Query: 253 ctgcctggttcctttcaggggaaaaaataccagtattatattaaacactaagcatgaata 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctgcctggttcctttcaggggaaaaaataccagtattatattaaacactaagcatgaata 460

                                                                       
Query: 313 tgggttggaatacatttcctgaagatttaatgcatttggattttttttgctgtggtggtt 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgggttggaatacatttcctgaagatttaatgcatttggattttttttgctgtggtggtt 400

                                                                       
Query: 373 tttttttaattacacttaaaactaattttgagtgaactttaaattagaataattacttga 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tttttttaattacacttaaaactaattttgagtgaactttaaattagaataattacttga 340

                                                                       
Query: 433 tattaagcatctcttaattttgggaaagtgggaaacttgcaactagaatgatgactgacc 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tattaagcatctcttaattttgggaaagtgggaaacttgcaactagaatgatgactgacc 280

                                                                       
Query: 493 atttatactgtcaaaattgaaaatgcttgattaaatatttcttttggaaagttttaaagt 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atttatactgtcaaaattgaaaatgcttgattaaatatttcttttggaaagttttaaagt 220

                  
Query: 553 ttttttt 559
           |||||||
Sbjct: 219 ttttttt 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no092_n17.g1 MSMg01no092_n17.g1 CHROMAT_FILE:
MSMg01no092_n17.g1 PHD_FILE: MSMg01no092_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:51 2005
         (527 letters)



>mm_chr3_47862923_47863849
          Length = 927

 Score = 1011 bits (523), Expect = 0.0
 Identities = 526/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctcatttgcatgcatttccagattaattttaaactcagctctgcagaaagaactact 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tttctcatttgcatgcatttccagattaattttaaactcagctctgtagaaagaactact 260

                                                                       
Query: 61  ctcaccatgttgttagtcagcacacagggcatctacttcaaacctttctaaatttagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaccatgttgttagtcagcacacagggcatctacttcaaacctttctaaatttagcct 320

                                                                       
Query: 121 tcttgctggctccactgtacttactttctaccctagatggccctattcttgaatcaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgctggctccactgtacttactttctaccctagatggccctattcttgaatcaggat 380

                                                                       
Query: 181 gctcactcaggatgctcacctctgaaggtcatgccatgggactcctggcccctaaggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcactcaggatgctcacctctgaaggtcatgccatgggactcctggcccctaaggctt 440

                                                                       
Query: 241 ccagttgagcttcaggagggatgagtctcagtgggaaaccagaagggtcaaaaaaggcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagttgagcttcaggagggatgagtctcagtgggaaaccagaagggtcaaaaaaggcag 500

                                                                       
Query: 301 gttgtaagaattttcttctaactgcagctcaggaaggtcacaaaggttggctatgctatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgtaagaattttcttctaactgcagctcaggaaggtcacaaaggttggctatgctatt 560

                                                                       
Query: 361 ggactgacaatgacaaaattccagagcactgtacaactagctgaactttagactcggctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggactgacaatgacaaaattccagagcactgtacaactagctgaactttagactcggctt 620

                                                                       
Query: 421 tgtctgttacactccaatcacctaggaatatgcataaaaacataaattttcactgcacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtctgttacactccaatcacctaggaatatgcataaaaacataaattttcactgcacct 680

                                                          
Query: 481 gattcaatcttttataatgaattccaatgtaactgaaacctctccaa 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattcaatcttttataatgaattccaatgtaactgaaacctctccaa 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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