BAC Information

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BAC

Clone NameMSMg01-092O04
Chromosome3 (Build37)
Map Location 83,589,164 - 83,589,506
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2
Downstream geneLOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092O04.T7 (MSMg01no092_o04.b1)MSMg01-092O04.TJ (MSMg01no092_o04.g1)
ACCAG310465AG310466
length712728
length of high quality
(start - end)
471 (37 - 507)343 (68 - 410)
definitionCHROMAT_FILE: MSMg01no092_o04.b1 PHD_FILE: MSMg01no092_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:53 2005CHROMAT_FILE: MSMg01no092_o04.g1 PHD_FILE: MSMg01no092_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCTC
ACCTGATGACTACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTG
GCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATTGCA
AGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTG
GACATAATACTACCGGAGGATCCAACAATACCTCTCCTGGGCATATATCC
AGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAG
CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCA
ACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATGCTA
CTCAGCTATTAAAAAATGAATTTATGGAATTCCTAGGCAAATGGATGGAC
CTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCACA
CAATATTGTACTCACTGACTAGTGGATATTAGCCTCCAAACTTACGATAC
CCTAGATATAAGCTACCACTTGCTAAAGGCATGAAATTCAAGAAGAACGA
AGACCAAGTCGG
TGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCGAGTCAGTAGGAAATGGGAGCAGTCATGGACA
GTTGGGAGAAATGAAAGGCTTTGGAATTTCAAGGGAAGAGTTTCATTTGC
GAGGATGTGTGCTAGTCTGGAAAACACTTCAGAGGAATTGTGTAGAAATT
AAGCTCCTGGTCTCAGCTTTCCTGGCCATTCTCTGCCCGGTCATCAATTC
TTCCCCTCTCTCCTGGCTTCCTGGGGTCAAGCTAACTGCTCGTTGGCTAG
ATCTTGCAAAACTCCTTTGTGTTGTTTTACAGATGAGATTTTCCTTTCAT
TGATTCATTTCTCCCCCCCCCCATAAAATATGTAACTGATTAGCATTAAG
CTAATTCAATGTCTCCTAATGAATCCAGCACAGCCAAGGGCACTTGGACA
AGCAAAGGTACAATCCAGGCACCTGGGGGGTGGGGGGTGGTCCCCATTCT
CCCTGTTCTCCCCATTCCCCGTCCTTGCTTCTCGTTCCCCTCTCTTCTCC
CTCGTTTCCCCTCTTTCCTCCCACTGTTCCTCTCTTTTTTCTACCCCCCT
CCCTTCTCCTGCTCCTCTCCCCTTTTTTCCTTCCCTCCCCCCATTTCCTC
TTCTCTATCCTCATACTTGCTATCTCCTTGCTTTCACCCTATCCTTTCCT
TTAATTTTTTCCTCCTCCCTCCCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_o04.g1 MSMg01no092_o04.g1 CHROMAT_FILE:
MSMg01no092_o04.g1 PHD_FILE: MSMg01no092_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:54 2005
         (343 letters)



>mm_chr3_83588964_83589706
          Length = 743

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgagtcagtaggaaatgggagcagtcatggacagttgggagaaatgaaaggctttggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cgagtcagtaggaaatgggagcagtcatggacagttgggagaaatgaaaggctttggaat 484

                                                                       
Query: 61  ttcaagggaagagtttcatttgcgaggatgtgtgctagtctggaaaacacttcagaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttcaagggaagagtttcatttgcgaggatgtgtgctagtctggaaaacacttcagaggaa 424

                                                                       
Query: 121 ttgtgtagaaattaagctcctggtctcagctttcctggccattctctgcccggtcatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttgtgtagaaattaagctcctggtctcagctttcctggccattctctgcccggtcatcaa 364

                                                                       
Query: 181 ttcttcccctctctcctggcttcctggggtcaagctaactgctcgttggctagatcttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttcttcccctctctcctggcttcctggggtcaagctaactgctcgttggctagatcttgc 304

                                                                       
Query: 241 aaaactcctttgtgttgttttacagatgagattttcctttcattgattcatttctccccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaaactcctttgtgttgttttacagatgagattttcctttcattgattcatttctccccc 244

                                                      
Query: 301 cccccataaaatatgtaactgattagcattaagctaattcaat 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cccccataaaatatgtaactgattagcattaagctaattcaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)