BAC Information

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BAC

Clone NameMSMg01-092O12
Chromosome3 (Build37)
Map Location 65,792,863 - 65,793,171
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1
Downstream geneLOC625048, Veph1, Tpi-rs2, Ptx3, LOC625115, Shox2, Rsrc1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092O12.T7 (MSMg01no092_o12.b1)MSMg01-092O12.TJ (MSMg01no092_o12.g1)
ACCAG310481AG310482
length710704
length of high quality
(start - end)
314 (41 - 354)352 (70 - 421)
definitionCHROMAT_FILE: MSMg01no092_o12.b1 PHD_FILE: MSMg01no092_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:55 2005CHROMAT_FILE: MSMg01no092_o12.g1 PHD_FILE: MSMg01no092_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCAGAGTCACCTTTCATCCACAGGACATGAGGAAATCGTTCATGAAGTC
AGAGCCTGACAAGGACGCTCGATAAGACTTTGACACGATAGTTTTTGTGC
CAGTTTCTAGTTGGAACAGTGACAACGTGATGAAGCTAAATGTCAATATG
CCTTGTCTCCAGAGCTGGAAATTCACCCATAAAGATGGCAGTGCCAGTGG
ATGCCCACTGCAAAAAGCCTTGGATTACATTCTACCAACAACTTGCCTAG
CTGTTAAAGCCTTTGAATCTGTATTTACAAATACAGTTATTTAAAAATTA
CTGTTTTTTTTATACCCCCACCACCCCACGTGGTGATCAGTATTTCCAAA
CATCACGCCGCTTACCTTAAGAAAAAATAAATGTCACGAGTGAGGTCTGT
TGAAATGCACTGTACAGCTTTGGTTGAATGTCTTGAGAACAAATATGCTT
CAGTGTCTAGAAAGCGTCTCTCCAATACGTTCACCATGCACTGCTTCCAT
CATTGCTAGCTTCAATCATTGTAAATCAGCCCTTATTATTTCCCCTAGAA
TTCTTATCAACCCCCTTAAATTTTTACCAACTCATTTCCAAGTATAATTC
TATTTTTGTACTTCTTAAAACACTCTATTTTCTTTTACATACCACTAAAC
ACTTCTAGCA
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCTTCGCCTAGGACGTGTCACTCCCTGATT
GGCTGCAGCCCATCGCCCGAGTTGACGTCACGGGGAAGGCAGAGCACATG
GAGTGGAGAACCACCCTCGGCACATGCGCAGATTATTTGTTTACCACTTA
GAACACAGCTGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCC
CAACAGTTTTGCTACTGTTTTGAATCATAACGTTAATATCTGATATGCAG
GTGGTCCTAAGGTGACCCCTGTGAAAGCGTTGTTTGACCCCCCCCAAAGG
GGTTTTGACCCACAGGTTGAGAACCACACACTGCCTTAGACCATTATGGG
GGTAGATTACTTCAGGCTCAGCCAGAAACAGGGGTTGAGGGTGGGATGAG
GAAAATCTCCCCCAAAAAGTAACACTGGGACTCCTTGCCAGCCTGCATTC
CATAGCGTGCTGCTAGGAAGATGACTCCCCACAGTCTTTCTTGGTATCCA
CAACTGCACTGCCCTGAAGGCAATGGCAGATGCCTGACTGCTGCCCAGAG
GCGGCTCCTGTGGGATTGCTCCTTTCTTGGATACCTCAACATAGTTCACT
GCACCCTCCCCCCCCACTAAACTAAACATACTAAAATCCCAACCCTACCC
CACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_o12.b1 MSMg01no092_o12.b1 CHROMAT_FILE:
MSMg01no092_o12.b1 PHD_FILE: MSMg01no092_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:55 2005
         (314 letters)



>mm_chr3_65792659_65793372
          Length = 714

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcagagtcacctttcatccacaggacatgaggaaatcgttcatgaagtcagag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcctcagagtcacctttcatccacaggacatgaggaaatcgttcatgaagtcagag 454

                                                                       
Query: 65  cctgacaaggacgctcgataagactttgacacgatagtttttgtgccagtttctagttgg 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cctgacaaggaagctcgataagactttgacacgatagtttttgtgccagtttctagttgg 394

                                                                       
Query: 125 aacagtgacaacgtgatgaagctaaatgtcaatatgccttgtctccagagctggaaattc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aacagtgacaacgtgatgaagctaaatgtcaatatgccttgtctccagagctggaaattc 334

                                                                       
Query: 185 acccataaagatggcagtgccagtggatgcccactgcaaaaagccttggattacattcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acccataaagatggcagtgccagtggatgcccactgcaaaaagccttggattacattcta 274

                                                                       
Query: 245 ccaacaacttgcctagctgttaaagcctttgaatctgtatttacaaatacagttatttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccaacaacttgcctagctgttaaagcctttgaatctgtatttacaaatacagttatttaa 214

                    
Query: 305 aaattactg 313
           |||||||||
Sbjct: 213 aaattactg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)