BAC Information

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BAC

Clone NameMSMg01-093B18
Chromosome3 (Build37)
Map Location 143,723,540 - 143,723,699
singlet/doubletsinglet
Overlap genenone
Upstream gene1700001N15Rik, EG668889, EG621809, LOC100039938
Downstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093B18.T7 (MSMg01no093_b18.b1)MSMg01-093B18.TJ (MSMg01no093_b18.g1)
ACCAG310637AG310638
length1,3511,053
length of high quality
(start - end)
39 (20 - 58)159 (70 - 228)
definitionCHROMAT_FILE: MSMg01no093_b18.b1 PHD_FILE: MSMg01no093_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:18 2005CHROMAT_FILE: MSMg01no093_b18.g1 PHD_FILE: MSMg01no093_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGGGCGCTATAGATTACTATAGGGAGAGGATCCGCGGAATTCTCTCTT
GATGCTGCCCCTTTAGGAGTAAGTGCGTTCTAACACTCACAGTAAACAAG
CCTTTAAGAGGTCTCACCGGACTTACCCGGCAGTCAGTTCTCTTATTCTC
TATCAGTTTTATGTGATAGGTATGCTTGGTTGTTTTGTATGCTGTTTAAG
ATAATGTTTTTGTTCTTTATTTTATTTTGATTTTATTTTTTTGTGTTTTT
TTTCTTTTTGTTCTTTGATTGTTTTTTTTTCTTATAGTTTTTTTTCTTGT
TTTTTTTTTGTTTTTTTTTTTTTTTTGTTCTTTTTTTATTTCTTTTTTTT
TTTTTATATTTTTTTTTTTTTTTTTTTGTTTTTCTTTCTTTTTTTTTTTT
TTTGCTATTTATTATTTTATTTTTTCTTTTTTCTTATATTTCTCCCTTCT
TTTTTTCTCCCCCTCCTTTTTTTTTTCTTTTTTTTTTTTTTTTTTATTTT
TTTTTTTTTTTTTTATTTTTTATTATTTTTATTTTCTTTTTTTATCTTTA
TGTTTTTCTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTATATTTTTTT
TATTTTATTTTTTTTCTTTTTATCTCTTTTTTTTTCCCTCTTTTTTTTTT
TATTTATTTTTTTTTTTTTCTTTTTTTTATTATTTCTTTTTTTTTCGTTT
TTTTTCTTTTTTTCTCCTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTT
ATTTTTTTTTTTTTTTTTTTTTTTTCTTTCTCTTTTTTTCTTTTTTTTTT
TTCTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTCTTTTTTTTTTTTCTTT
TTTTTTTTTTCTTTTCTTTTTTTTTTTTTCTTTTTTTTCTTTTTTTTTTT
TTTTTTTTTCATTTTTTTTTTATTTTTTTTTATTTTATTTTTTTTTTTTT
TTTTTTTTTTCTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTATTTTTTTT
TTTTTTTTTTTTCACCTTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTTT
TTTTTCTTTACTATTCTTATTTTTTTTTTTGTTTTATTTTTTCTTTTTTT
TTTTTATTTTTTTTTTCTTTTTCTTTTTTTTTTTTTTTTCTTTTTTTTAT
ATTTTTTTTTTTTTATTTTTTTCTTTATTTATTTTTATCTTTATTTTTTT
TTTTTGTATATTTTTTTTTTTTTTTTTTCTTTCTTATTCTTTCTTATATT
TTTTTCTTTATATTTTTCTTTTTTTTTGTGTATTTTATTTTTCTATTTTA
TTCGTTTTTTTTCTTTCTTTTTATTTTTTTTTTTATTTTCCCCTTTTTTT
A
TTACACATCGCAAGATGGTCCTGTTTAGTGCCGCAGGCCCCTGTGGACAT
CCACACACACACACCCATCAAGGGGAGCAGCTGTCCTGACGAGAGATCGG
ACTGAACAATGAGCTGGTTTAAAACTCTGATCCTAAGAACTTTTGCGATT
CTGCTTCCGTTGCCTGACTGAAGCTAGAGCACCCATCTAGCCTTCCTGAT
CTCTCTCGGGTGAGCAACAAGGCTGGGAATCACAGCCTTAGCCTCCTGGG
ACCACTCTGCTGGGGCAGTACTGTCACCATGCTCGTAGACCAGCGGACGC
TCTAATCTCTGTGCAATGGAACAAATATATGTTTTTTTGTCAAGGTGTAA
TACCAGCTATTTGACCCTTGTCGCCCTATGTTCATTTGACCTACCACATT
GTATAACATTTATCATTAATGTGTGTTATATGAGAAGCTGATGATATCCT
GTTATCAAGTGTCTGATTTACTGTGCTGTTGCTCGTATCTGTTTCCGTGA
CATCTGCTTTTCTCTGCTCCTTGTTCCTGTCTTTCTATTTCTTTCTTCTT
TTTTTTTCTATTTTGTTTCTGCTTTTATCTTTCTTTATCTTTCTTACTTT
TCCTTCTTTATCTTTTTTTTTTTCTTCTTTTTCTATTTTTTTCTCTCTGT
TCTCCTTTTGCTTTTTATGTTTTTTCTTCATCTTTCTTTATTTTCTTACT
TTCTTTCTCTTATCTCCCTATTCCCTTTCTTTCTCTTTTTCTTCCTATTC
TTTTTCTTTTTTTCTTTTTTTTCCCTCTCTTTTTTCTTTTTTTTTTTTAT
TTTTTCTCTTTTTCTCTTTCTTTTTTTTCTTTTTCTTTTCTTCTTTTCTT
TCTTTTTTCTTTTCTATCTCTTTTTTTTTTTCTTTTTTTTTCTTTTTTTT
CTTTTCTTCTTCTTTTTTACTATATTCCTCTCTTCTCTCTTCTTTTTCTT
TCTCTTTCTCTCTTTTTCTTTTTTTTCTTCTTTTTTGCTTCTTTTCTTTT
ATATTTTTTCTTTATGTTTTTCCTTTTCTTCTTATATCTCTTTATCTTCT
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_b18.g1 MSMg01no093_b18.g1 CHROMAT_FILE:
MSMg01no093_b18.g1 PHD_FILE: MSMg01no093_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:18 2005
         (159 letters)



>mm_chr3_143723340_143723899
          Length = 560

 Score =  271 bits (140), Expect = 2e-77
 Identities = 155/160 (96%), Gaps = 1/160 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggggagcagctgtcctgacgagagatcggactgaacaatgagctggtttaaaactctg 60
           ||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 201 aaggggaacagctgtcctgacgagagatcagactgaacaatgagttggtttaaaactctg 260

                                                                       
Query: 61  atcctaagaacttttgcgattctgcttcc-gttgcctgactgaagctagagcacccatct 119
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 atcctaagaacttttgcgattctgcttcccgttgcctgactgaagctagagcacccatct 320

                                                   
Query: 120 agccttcctgatctctctcgggtgagcaacaaggctggga 159
           |||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 agccttcctgatctctctcgggtgagcaacgaggctggga 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 560
Length adjustment: 8
Effective length of query: 151
Effective length of database: 552
Effective search space:    83352
Effective search space used:    83352
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)