BAC Information

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BAC

Clone NameMSMg01-093M24
Chromosome3 (Build37)
Map Location 114,458,309 - 114,458,631
singlet/doubletsinglet
Overlap genenone
Upstream geneCol11a1, LOC100043220
Downstream geneOlfm3, EG546808, Edg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093M24.T7 (MSMg01no093_m24.b1)MSMg01-093M24.TJ (MSMg01no093_m24.g1)
ACCAG311152AG311153
length1,1131,282
length of high quality
(start - end)
95 (54 - 148)326 (77 - 402)
definitionCHROMAT_FILE: MSMg01no093_m24.b1 PHD_FILE: MSMg01no093_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:48:58 2005CHROMAT_FILE: MSMg01no093_m24.g1 PHD_FILE: MSMg01no093_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:48:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAAAAATTAACATAGTGAAATTTATTAATTTGAATGACTTTAAAGAAT
ATGCTGCTATGATGAAGCAGGGGAATGGATAGCATAAGGACTCTTCACCT
TTAAAGTAACGACCATAACATTTTGATGCTGTAACTCATTTGATGGGTGA
AGGTAGGGAGTTAAGTTTTTAACTTAATGACATATATGGATTATTTAACT
GTTAATATATGTTTGTTATGATCAATATTCTCTTTTATTTCATTTTATTT
TCTCATTTTTTTTTGAATACTTTCTTGTTTCTCATTTATCCTTACTTTGT
TGTATTTCATTACATTTTTTTTATTTCTGCTTTTTTTTTTTCAACCCATT
ATTGTTCTTTTATTTTTTTTTTTTTTTTTTCTCCCTCTTCTTTTTTCCCC
TTATTTTTTTTTCTTTTCTATATTTTCTATTTTTTTTCTTCTCTTTTTAT
TCCATTTTTTTTTTTTTTCTTTTCTTTCTTTTTTTATTTTTTTTCTTTCT
CTTTTTTATTTTTTCCTTCTCTTTTATTTTTTTTTTTTTTCCTTTTATTT
TTTTTTCCTTTCTTCCTTTATTTTTTCTTTATTTTTTTTCGTTTTCTTTT
TTGTATTTTTTTTTTCTCTTTTATTCTTTCTTTTTTTCTTTTTTTTTTTT
TTCTTTTTCTTTCTTTTTATTTCTTTTTTTTTTCTTATTTTTTCTTTTTT
CTCTATTTTCTTTTTCTTTTCTTTTTTCTTTTTTTTTATTTTTTTACTTT
TTCTTTTTCTTTCTTTTTTTTTTTTCCTTTTTTTTTTCTTATTTTTTCTA
TTTTTTTTATTTTATTTTTTCTTTTTATTTTTATTTTTTTTCTTTTCTTT
TTTTTTTTTTTTCTTCTCTTTTTTTTTTTTTTTTTATTCCTTTTTTTTAT
TTTTTTTTACATTTTTTTTTCTATTTTTCTTTTTTTTCTTTTTTTATTTT
TCTTTTTATATTTTTTTTCTATCTAATTCTTTTTCTTTCTATTTTTTCTT
CTATTTTTTTTTTTTTTATACTTTTTCTTTTTTTTTTTTTCTTTTTTTTT
TTTTTTTTTTTCTCTTATTCTTTTTTTCTTCTATTTATTTTTTTTTTGTA
TTTTATCTTCTTT
TTTTCTTTTCAAGGTAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTTTCAGTTTCCATCAGATTGAATCCAATG
AGAAGTACCCCTTAATTTATCATGTCCCTTAATTATCTGTACTGAGTTTC
AATGAAACTAGGATTATCAAATTCTTAAGTGTCCACATTCTCTGTTTTCT
TCAATAGCTCATTAAGAAAAAGCAGGCTTTGATAATCAACTAAATGTGAA
TAAAATAAGTGACATAAAAGTCCTTCAAAAACAACGATAGAAAAAAATGT
GTATTCAAAAATATTTATAATGTGTTTCCAAAGACATCTTCTTGGTAGTC
AATTGCTTCATTTTTTCAGCTTATTGAACATAATTTCCGATACATTTGAT
TTATTTGCATTTTCTTAGTTAAGTTTTTTTGGTATGTCTGTGAGTTGACC
TATTTTATCCCCCGCCAACAAAGATGTGTTTTTTGATTAAAAAAAAAGAT
TATATTTCTTTCCTCTTACTTGAATAAATACCCTTTTTATATTGATTCTT
ACAGTTTTTTGATCTGTGCATACCTATTCCTCTTTTTGATTTACTGTTTC
TTTATTGATATGTCTAACGCATTCTGCTTTTATGACTTGTATCACTTTTT
TTTCTAGTCTTCTTTTCTTTATTATATTTTGTTTCTCTTTTTTCTTTTAT
TTATTTCTTCTGCTTTATTGCTTTCCTTATTTTTTTTTAATTTTCTTTTT
TTTTTGTTTTCCAATTTTTATTCTTATTCTTCCTATTTTTTTTTTTTTTT
TTCTTTTACTTTACTTATTACCTTTTTTTTTTTCTTTACTTTTTTTTTTA
TTTTTTTCTTTCTTTTTTTTCTTTTTATTTTTATATTTTTTTATTTTTTT
TCTATTTCATTTATTTATTCATTCTTTTCTTTTACTTTTCTTTTTTCTCT
TTATCTTTTTCTATTTTTATTTTACTTTTATTTCTTTTTTCTATTCTTAT
TCTTCTTTTTATTTCTCTTTATTCTTCCATATTACATTTTTATTTTTTTA
TCCTTTCTTATATTTTCCTTTCTCTTCCATTACTTTTTACTTTTATTTAT
CTCCTTTTTATCTATTCTTCTCTTCTACATTCATTTTCTAGTAGTCGATC
TTTCTACTTTCTTTATATTTCTTTCTTCTTTCTTTTTTCCTTATTCGTAT
TTGCTATTATACTTCTTCTGTACTTATTTTTCCCATCTTTTATTATATTC
TCATCCATTATCTATTCTTTATCTTTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_m24.g1 MSMg01no093_m24.g1 CHROMAT_FILE:
MSMg01no093_m24.g1 PHD_FILE: MSMg01no093_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:48:59 2005
         (326 letters)



>mm_chr3_114458109_114458834
          Length = 726

 Score =  567 bits (293), Expect = e-166
 Identities = 316/325 (97%), Gaps = 4/325 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttccatcagattgaatccaatgagaagtaccccttaa--tttatcatgtcccttaatt 58
           ||||||||||||||||||||||||||||||||||  |||  |||||||||||||||||||
Sbjct: 201 gtttccatcagattgaatccaatgagaagtaccc--taaaatttatcatgtcccttaatt 258

                                                                       
Query: 59  atctgtactgagtttcaatgaaactaggattatcaaattcttaagtgtccacattctctg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 259 atctgtactgagtttcaatgaaactaggattatcaaattcttaagtgttaacattctctg 318

                                                                       
Query: 119 ttttcttcaatagctcattaagaaaaagcaggctttgataatcaactaaatgtgaataaa 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 319 ttttcttcaatagctcattaagaaaaagcaggctttgataatcaactaaatgtgaagaaa 378

                                                                       
Query: 179 ataagtgacataaaagtccttcaaaaacaacgatagaaaaaaatgtgtattcaaaaatat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ataagtgacataaaagtccttcaaaaacaacgatagaaaaaaatgtgtattcaaaaatat 438

                                                                       
Query: 239 ttataatgtgtttccaaagacatcttcttggtagtcaattgcttcattttttcagcttat 298
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttagaatgtgtttccaaagacatcttcttggtagtcaattgcttcattttttcagcttat 498

                                    
Query: 299 tgaacataatttccgatacatttga 323
           ||||||||||||| |||||||||||
Sbjct: 499 tgaacataatttctgatacatttga 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)