Query= MSMg01no094_a03.b1 MSMg01no094_a03.b1 CHROMAT_FILE:
MSMg01no094_a03.b1 PHD_FILE: MSMg01no094_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:28 2005
(313 letters)
>mm_chr3_71313892_71314603
Length = 712
Score = 282 bits (146), Expect = 1e-80
Identities = 161/166 (96%), Gaps = 1/166 (0%)
Strand = Plus / Minus
Query: 139 agagacaaacatggagatatttggtaagcaaagttccttataatgaccctttaaagaatg 198
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agaggcaaacatggagatatttggtaagcaaagttccttataatgaccctttaaagaatg 421
Query: 199 gttgtttccacattttagatgaaaatattttcacaacaaatataacacttaaaaaaacag 258
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 420 gttgtttccacattttagatgaaaatattttcacaacaaacataacact-aacaaaacag 362
Query: 259 tttctacctactttatacacaatttatatatatatatatatatata 304
||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 361 tttctacctactttatacacaatatatatatatatatatatatata 316
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 712
Length adjustment: 9
Effective length of query: 304
Effective length of database: 703
Effective search space: 213712
Effective search space used: 213712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_a03.g1 MSMg01no094_a03.g1 CHROMAT_FILE:
MSMg01no094_a03.g1 PHD_FILE: MSMg01no094_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:28 2005
(472 letters)
>mm_chr3_71166550_71167422
Length = 873
Score = 785 bits (406), Expect = 0.0
Identities = 461/488 (94%), Gaps = 17/488 (3%)
Strand = Plus / Plus
Query: 1 caggacagccaagctacacaatgaaaacctgtaaaaatgt--------------taaaaa 46
||||||||||||||||||||| ||||||||||| |||||| ||||||
Sbjct: 187 caggacagccaagctacacaacgaaaacctgtagaaatgttaaaaaaataaaaataaaaa 246
Query: 47 aaaa-ggagataaatgtgtatatgtgtataagtatgtgtgtctaagattatgtatatgct 105
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaaacgtagataaatgtgtatatgtgtataagtatgtgtgtctaagattatgtatatgct 306
Query: 106 taaagatgtgttatatttatggtcacatatagatcttgacatacatttattatccacaaa 165
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct: 307 taaagatgtgttatatttatgatcacataaagatcttgacatacacttattatccacaaa 366
Query: 166 tcatccttaaaatggtaagctctattatagaatgcttcatttataccactgacaccatag 225
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 367 tcatccttaaaatggtaagctctattatagaatgcttcttttataccactgacagcatag 426
Query: 226 gtaaattatattatattatctgccaggtagtagttaaagcagaacgaataaataatgaaa 285
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 427 gtaaattatattatattatctgccgggtagtagttaaagcagaa-gaataaataatgaaa 485
Query: 286 catgacaataatatctacttactacaaatcactccacaatacacttcataataatatttc 345
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 486 catgacaataatatctacttactacaaatcactccacaatacacttcatagtaatatttc 545
Query: 346 tgcatgtgatatttacctaccagtcaa-tatagagttttaacttcattgcagagtaagtt 404
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 546 tgcatgtgatatttacctaccagtcaaatatagagttttaacttcattgcagagtaagtt 605
Query: 405 aaggatcttaatacacaggtgtaataaagacatgttgtgatctaaccacaaaacatacat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aaggatcttaatacacaggtgtaataaagacatgttgtgatctaaccacaaaacatacat 665
Query: 465 tactagta 472
||||||||
Sbjct: 666 tactagta 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space: 398706
Effective search space used: 398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
