BAC Information

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BAC

Clone NameMSMg01-094D20
Chromosome3 (Build37)
Map Location 69,474,673 - 69,475,273
singlet/doubletsinglet
Overlap genenone
Upstream geneIl12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309, B3galnt1
Downstream geneRpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868, LOC670542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094D20.T7 (MSMg01no094_d20.b1)MSMg01-094D20.TJ (MSMg01no094_d20.g1)
ACCAG311463AG311464
length1,373710
length of high quality
(start - end)
---602 (75 - 676)
definitionCHROMAT_FILE: MSMg01no094_d20.b1 PHD_FILE: MSMg01no094_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:48 2005CHROMAT_FILE: MSMg01no094_d20.g1 PHD_FILE: MSMg01no094_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAGAGGAGTGAAGGTANANNNTTAAATTAATAGTATATAAGTGATAAAT
AATTGNGGGGGTGTTGNGGGGTTAGATAAAAAAGGAGGTGTTGAGATAGG
CGCGAGATGAGATAACAGCGTAAATGATGTAGAGTCAGCGAAGCGACCAC
TATATAGGGAGACAAGAGTAGAACGGTGGGTATTTGATGAGGCGTGGTTT
TTATCACCCCGTATTACGCCTATTCATCCTACTTTCACTTTTGTGCTGGA
CAGATATTGGTTACACATTAAAATGACCCTTGATTACTATCAGCACTTGT
CTCGTAAAGAAAGGGGGGAGGCAGGGGCGCAATAAGATAATACAATCACA
GAACTCTGAACATATATTAACACTCACAGGTTTATTTCTACACGTAGCGG
GCGGAGGGTGGCGTTTGCGCGCGCCCTGTTGTGTATCTGGTTACAGGCGG
CGTGTTGAGTCGCTCGAGGACGACATTCAAACCAATATATACTATTGACA
TAACACATCCACAATTGAAGCCGAGAGATGGGGGATAGGGAGGAGGACGA
TTGCAACCTCCGCCGATGGACACGGGCTCGTGCGTCATTGGGCGTCGCTG
ACGTTTTCCCGCGCCACGCTCTCACACTAACTTTCTCACTCTCCACCATA
GCATAGAAACGCGGACGATACGCAGCATGTACAGCGAAAGTTATCGATAT
TGCTATACCATACAGGTGATTTGTATGTGACGCTTATAGAGCTTCATGAG
CCTTATCCTACCGATTATCTCGCGGATCGCTGGAGAGAGCGCATGCAATA
TTGATCTACTATCCTGATACTGCTATCTTCCATTATTTCGCAACAACCCT
CATCTATGTAACGGGAAATGACGATAGACGACTGTCGCAGCACTGAGCCG
CCTGATCATCCCTATATGAAGTACCTAGCGGCAAGAGATACAAACAGGCT
GTCGACCAGCAGACGACGACATAAGAGCGTAAATATAGACGCTGCAATCG
CCCAACATGAATTATCTTACCGATAAATCCCCATTACGCTTATTGTGCTC
GCTCCTTATATGTCGAGTCACTCATCAATCTTGTGTCGTGCTCTCGATCG
GTGCCCGCACCTTGTGTGTGANGNAGATACAGGTATCATAAGCACGCAGC
GACGAGTAGACGCGNGCGAGACAACGNGAGGCGACAGCACGTATATCACG
CGTCTTCGGTGATAGTGATAGTGAGTCGCGACCGCTACAGTGAATAGTAG
AGATTNATACTACTCATATATTTTATATCGCACGCACACGTCCGTNTCCG
GTNTCAACTCGTATCGATACATGTAGATGTAAGAGATAGACAGCGAGAAG
ATAGTAATATGCTACAAGCATGN
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCTCTCACTCACTGCAGA
GTGAGACCATTTCAAAAAAACAGCCATCGAATGACATCTATTGCTTTTCA
GCTCCAAAGAGGCCCTGACCATCTTCCGGCCAGATGCTCTGTGAGACTTC
TGTGTACCAGTGTCTGTCACTTAAGTAAACAGAGATCGAGTTGTCATCTC
CTACATCTAAGAGATCCCTAGGAATACGCTTTGCTTTGTGCTTTGCTCAT
TAAATGCTTATGAAATTGAACTATTAAAAAATGACATCTTGAGAATTTCC
TTGAGCCATGCTGGGGCTAAGCCCCCTGGATATAGGACATCGTGCTCCCT
GTATGTATAATAACTGACAAGTTGTCCCCACTGAGCTCAACACATCTGCA
AGAAGACAGTCCTTTTTGTACTATTCTGAAATCTCTGATATGTATTCTAA
TAAAAAAATCAAGAGTCATTTCTCCAGAGCAATAAACATGTATTGCCTTG
GCTATTAAAAATGAATAATTCAATATTCTATATCTTTTTTCCAAATTTTC
AGTAATCTTGGGGTCAACTTGCTATTGATTGATGAAATGAACGGTATTAC
TAGAAAGCTACCTATAAAATATTTACCAGCCAAAACCTGTGGACCGCAGT
AGTCACAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_d20.g1 MSMg01no094_d20.g1 CHROMAT_FILE:
MSMg01no094_d20.g1 PHD_FILE: MSMg01no094_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:48 2005
         (602 letters)



>mm_chr3_69474473_69475473
          Length = 1001

 Score = 1125 bits (582), Expect = 0.0
 Identities = 597/602 (99%), Gaps = 1/602 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccagcctctcactcactgcagagtgagaccatttcaaaaaaacagccatcgaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 801 caggccagcctctcactcactgcagagtgagaccatttcaaaaaagcagcaatcgaatga 742

                                                                       
Query: 61  catctattgcttttcagctccaaagaggccctgaccatcttccggccagatgctctgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catctattgcttttcagctccaaagaggccctgaccatcttccggccagatgctctgtga 682

                                                                       
Query: 121 gacttctgtgtaccagtgtctgtcacttaagtaaacagagatcgagttgtcatctcctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacttctgtgtaccagtgtctgtcacttaagtaaacagagatcgagttgtcatctcctac 622

                                                                       
Query: 181 atctaagagatccctaggaatacgctttgctttgtgctttgctcattaaatgcttatgaa 240
           |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 atctaagagatcactaggaatacgctttgctttgtgctttgctcatt-aatgcttatgaa 563

                                                                       
Query: 241 attgaactattaaaaaatgacatcttgagaatttccttgagccatgctggggctaagccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 attgaactattaaaaaatgacatcttgagaatttccttgagccatgctggggctaagccc 503

                                                                       
Query: 301 cctggatataggacatcgtgctccctgtatgtataataactgacaagttgtccccactga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cctggatataggacatcgtgctccctgtatgtataataactgacaagttgtccccactga 443

                                                                       
Query: 361 gctcaacacatctgcaagaagacagtcctttttgtactattctgaaatctctgatatgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctcaacacatctgcaagaagacagtcctttttgtactattctgaaatctctgatatgta 383

                                                                       
Query: 421 ttctaataaaaaaatcaagagtcatttctccagagcaataaacatgtattgccttggcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttctaataaaaaaatcaagagtcatttctccagagcaataaacatgtattgccttggcta 323

                                                                       
Query: 481 ttaaaaatgaataattcaatattctatatcttttttccaaattttcagtaatcttggggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttaaaaatgaataattcaatattctatatcttttttccaaattttcagtaatcttggggt 263

                                                                       
Query: 541 caacttgctattgattgatgaaatgaacggtattactagaaagctacctataaaatattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 262 caacttgctattgattgatgaaatgaacggtattactagaaagctacatataaaatattt 203

             
Query: 601 ac 602
           ||
Sbjct: 202 ac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1001
Length adjustment: 10
Effective length of query: 592
Effective length of database: 991
Effective search space:   586672
Effective search space used:   586672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)