Query= MSMg01no094_e21.b1 MSMg01no094_e21.b1 CHROMAT_FILE:
MSMg01no094_e21.b1 PHD_FILE: MSMg01no094_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:54 2005
(319 letters)
>mm_chr3_76366141_76366863
Length = 723
Score = 574 bits (297), Expect = e-168
Identities = 312/319 (97%), Gaps = 4/319 (1%)
Strand = Plus / Minus
Query: 5 ggaattcatattgtatccttagatcccaaaccgcctgctctcagggagacaatgtgagac 64
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggaattcatattgtagccttcgatcccaaaccgcctgctctcagggagacaatgtgagac 464
Query: 65 t----agtgtcactttagtactctttgtcattcctccctcaagaaagctggtgaacataa 120
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tagtaagtgtcactttagtagtctttgtcattcctccctcaagaaagctggtgaacataa 404
Query: 121 tgttcttaaggaaacatcagaccacatgtacattgcacatattcccttttctactctaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgttcttaaggaaacatcagaccacatgtacattgcacatattcccttttctactctaaa 344
Query: 181 ctcagcctgctacccttctcaaagaccacatggtagaacatggtgattggtactcctgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctcagcctgctacccttctcaaagaccacatggtagaacatggtgattggtactcctgac 284
Query: 241 aagagggcagcaatgatcctgatcctgaggcttcactataaagtcgccccagcttccttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aagagggcagcaatgatcctgatcctgaggcttcactataaagtcgccccagcttccttt 224
Query: 301 cccctggctctcttattgt 319
|||||||||||||||||||
Sbjct: 223 cccctggctctcttattgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 723
Length adjustment: 9
Effective length of query: 310
Effective length of database: 714
Effective search space: 221340
Effective search space used: 221340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_e21.g1 MSMg01no094_e21.g1 CHROMAT_FILE:
MSMg01no094_e21.g1 PHD_FILE: MSMg01no094_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:54 2005
(502 letters)
>mm_chr3_76240856_76241757
Length = 902
Score = 847 bits (438), Expect = 0.0
Identities = 492/522 (94%), Gaps = 20/522 (3%)
Strand = Plus / Plus
Query: 1 tttagaacctggatgaacagaattgtccacacatgtaaaagatttctcagaaaatttatt 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttagaaactggatgaacagaattgtccacacatgtaaaagatttctcagaaaatttatt 240
Query: 61 ctttctacattggtgtaaagagcatgggtctacaaaagccaaaaaaaaaaaa------cc 114
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 241 ctttctacattggtgtaaagaccatgggtctacaaaagccaaaaaaaaaaaaaaaaaacc 300
Query: 115 caatgatttttcagaaataatataaacagctgatatatatatatatatatatatat---- 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caatgatttttcagaaataatataaacagctgatatatatatatatatatatatatatat 360
Query: 171 ----------gagaaattattatcataaagaccataagagaggcaattttgatctaacgt 220
||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 361 atatatatatgagaaattattattataaagaccataagagaggcaattttgatctaacgt 420
Query: 221 atggttttaaagtgaataggcttgttgtgctctctctgttttaaaatggtcccatcctgc 280
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 421 atggttttaaagtgaataggcttgttgggctctctctgttttaaaatggtcccatcctgc 480
Query: 281 atcttgccctatagctttgcattttaaaatgattcataaaatctgttttagatgttctac 340
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 481 agcttgccctatagttttgcattttaaaatgattcataaaatctgttttagatgttccgc 540
Query: 341 ctttgcagatttatctattctctaatgcttgacatcttccacttgctagtctctcattaa 400
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 541 ctttgcagatttatctattctctaatgcttgacatcttccacttactagtctctcattaa 600
Query: 401 taagatttatctatttgcgcaaattccattaagcattaaaagcagatacaatcagaccca 460
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taagatttatctatttgtgcaaattccattaagcattaaaagcagatacaatcagaccca 660
Query: 461 tcacttcctcctttatttaaagtgagtattcatatttaattc 502
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcacttcctcctttatttaaagtgagtattcatatttaattc 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
