BAC Information

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BAC

Clone NameMSMg01-094F03
Chromosome3 (Build37)
Map Location 63,750,176 - 63,799,893
singlet/doubletdoublet
Overlap geneSlc33a1, Gmps
Upstream geneLOC666967, Mme, Plch1, LOC100040836, E130311K13Rik
Downstream geneLOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094F03.T7 (MSMg01no094_f03.b1)MSMg01-094F03.TJ (MSMg01no094_f03.g1)
ACCAG311523AG311524
length681700
length of high quality
(start - end)		560 (44 - 603)571 (76 - 646)
definitionCHROMAT_FILE: MSMg01no094_f03.b1 PHD_FILE: MSMg01no094_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:55 2005CHROMAT_FILE: MSMg01no094_f03.g1 PHD_FILE: MSMg01no094_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,750,176 - 63,750,732)(63,799,323 - 63,799,893)
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATTTATTGATTGTTTTTGTTAGTTTTGTTTTTTGAGACAGTCTCA
TGTAGCCTAGGCTAGCCTCCAATTCACAATCCAGCTAATACTGCCCTTGA
ACTCTAGATCTTCCTGCCTCCACCTCTAAAATGTTGGGACTACATACATG
GTATTACCATACCTGGATTCTAAATTATTTAACTGTGTGGGGAAAAAAAT
AAACAAAACTGTTGAGACTGTTGAGGTTTCAGCCAAGAAGTTTATATCTT
ACTTTCAAAGATTTAGATGAGGTTCTATTAAAAAATGCAGTGACTCTCTA
ATATATATTAGCAATATTACAGTTGAGTACCATTTACTTGAGTCCCTTAT
ATTTAGAATCAAAACCCTCTTCTGAAACAGAAGTGAGGTTAAAGCAGAGT
AGAGATCCCTTCCTTTGTGGACTGGAAGCACTTGTAACTCAGAAAGAAAA
GGCAGTTTATCATATACTGCCAAAAAAATCTCACACTAAGCTTTTTAATA
CAACATCTAAGTCAAAGATTACAACCTTAAACCCAGTATCCATCTCTCTT
ATCGTAAGATAAGAAATGAAATAAAATGAAAAAAAGAATCTAAACCCGAG
CCACGTACAGTTGCTTACATCTATCAGCTCA

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACTCCAGTTCTAAGAAAGCAGCCA
AGTGTTCTTAACTGCAGAAACATTTTTCCAGCCCCAATTAAAAAATATCA
AATGAAAACTCAGTATATGAGCAAAGGGTATGAACAGTCATTTCTAAGAT
AAACAAATGACCAATAAGCATCTGAAAAGATTCTAGACATTACTATAGGG
AAATAAAAATCGAAACCACACTGATCTTAGCATAGCAGTGCTTGCACTCC
TTCCTGCAAGAACAATGCTGGGAAGGTAAAAGGACAGTAACTTCAAGAAA
CATATGGAGATCCTGTTTCAAGGGACAAAAAATAACAGAGATACTACTTT
TCAAGGGAACAATGGCATAGCTATTAGTATAGCTACTAAACACAAATAAA
AAACAGTGAACACACAAAAGCCAGAACTCCTGTGGTACTTTGGTTAAAAA
GTAGAATGCTGCAACTGCTATGTGAGATAGCATGTACTTTCCACAAAAGA
AAATTAAACTTCTAAGTATGTATACTGAAGAACTGAAAGGATTCTTGAAG
CACTAAATATATACCTACATTCATAGCAAAACTCACAATGTTCAAAGAAT
AGATGTATCACAAATGTTCAGTGATGAATAAAAATGAAGTATCCAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_f03.b1 MSMg01no094_f03.b1 CHROMAT_FILE:
MSMg01no094_f03.b1 PHD_FILE: MSMg01no094_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:55 2005
         (560 letters)



>mm_chr3_63749973_63750932
          Length = 960

 Score = 1069 bits (553), Expect = 0.0
 Identities = 556/557 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcatttattgattgtttttgttagttttgttttttgagacagtctcatgtagc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcatttattgattgtttttgttagttttgttttttgagacagtctcatgtagc 263

                                                                       
Query: 64  ctaggctagcctccaattcacaatccagctaatactgcccttgaactctagatcttcctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaggctagcctccaattcacaatccagctaatactgcccttgaactctagatcttcctg 323

                                                                       
Query: 124 cctccacctctaaaatgttgggactacatacatggtattaccatacctggattctaaatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctccacctctaaaatgttgggactacatacatggtattaccatacctggattctaaatt 383

                                                                       
Query: 184 atttaactgtgtggggaaaaaaataaacaaaactgttgagactgttgaggtttcagccaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atttaactgtgtggggaaaaaaataaacaaaactgttgagactgttgaggtttcagccaa 443

                                                                       
Query: 244 gaagtttatatcttactttcaaagatttagatgaggttctattaaaaaatgcagtgactc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaagtttatatcttactttcaaagatttagatgaggttctattaaaaaatgcagtgactc 503

                                                                       
Query: 304 tctaatatatattagcaatattacagttgagtaccatttacttgagtcccttatatttag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctaatatatattagcaatattacagttgagtaccatttacttgagtcccttatatttag 563

                                                                       
Query: 364 aatcaaaaccctcttctgaaacagaagtgaggttaaagcagagtagagatcccttccttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatcaaaaccctcttctgaaacagaagtgaggttaaagcagagtagagatcccttccttt 623

                                                                       
Query: 424 gtggactggaagcacttgtaactcagaaagaaaaggcagtttatcatatactgccaaaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtggactggaagcacttgtaactcagaaagaaaaggcagtttatcatatactgccaaaaa 683

                                                                       
Query: 484 aatctcacactaagctttttaatacaacatctaagtcaaagattacaaccttaaacccag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 684 aatctcacactaagctttttaatacaacatctaagtcaaagattacaaccttaaatccag 743

                            
Query: 544 tatccatctctcttatc 560
           |||||||||||||||||
Sbjct: 744 tatccatctctcttatc 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no094_f03.g1 MSMg01no094_f03.g1 CHROMAT_FILE:
MSMg01no094_f03.g1 PHD_FILE: MSMg01no094_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:55 2005
         (571 letters)



>mm_chr3_63799013_63799983
          Length = 971

 Score = 1104 bits (571), Expect = 0.0
 Identities = 571/571 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactccagttctaagaaagcagccaagtgttcttaactgcagaaacatttttccagcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 aactccagttctaagaaagcagccaagtgttcttaactgcagaaacatttttccagcccc 822

                                                                       
Query: 61  aattaaaaaatatcaaatgaaaactcagtatatgagcaaagggtatgaacagtcatttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 aattaaaaaatatcaaatgaaaactcagtatatgagcaaagggtatgaacagtcatttct 762

                                                                       
Query: 121 aagataaacaaatgaccaataagcatctgaaaagattctagacattactatagggaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 aagataaacaaatgaccaataagcatctgaaaagattctagacattactatagggaaata 702

                                                                       
Query: 181 aaaatcgaaaccacactgatcttagcatagcagtgcttgcactccttcctgcaagaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aaaatcgaaaccacactgatcttagcatagcagtgcttgcactccttcctgcaagaacaa 642

                                                                       
Query: 241 tgctgggaaggtaaaaggacagtaacttcaagaaacatatggagatcctgtttcaaggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tgctgggaaggtaaaaggacagtaacttcaagaaacatatggagatcctgtttcaaggga 582

                                                                       
Query: 301 caaaaaataacagagatactacttttcaagggaacaatggcatagctattagtatagcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 caaaaaataacagagatactacttttcaagggaacaatggcatagctattagtatagcta 522

                                                                       
Query: 361 ctaaacacaaataaaaaacagtgaacacacaaaagccagaactcctgtggtactttggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctaaacacaaataaaaaacagtgaacacacaaaagccagaactcctgtggtactttggtt 462

                                                                       
Query: 421 aaaaagtagaatgctgcaactgctatgtgagatagcatgtactttccacaaaagaaaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaaaagtagaatgctgcaactgctatgtgagatagcatgtactttccacaaaagaaaatt 402

                                                                       
Query: 481 aaacttctaagtatgtatactgaagaactgaaaggattcttgaagcactaaatatatacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aaacttctaagtatgtatactgaagaactgaaaggattcttgaagcactaaatatatacc 342

                                          
Query: 541 tacattcatagcaaaactcacaatgttcaaa 571
           |||||||||||||||||||||||||||||||
Sbjct: 341 tacattcatagcaaaactcacaatgttcaaa 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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