BAC Information

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BAC

Clone NameMSMg01-094F09
Chromosome3 (Build37)
Map Location 29,554,617 - 29,634,780
singlet/doubletdoublet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094F09.T7 (MSMg01no094_f09.b1)MSMg01-094F09.TJ (MSMg01no094_f09.g1)
ACCAG311535AG311536
length776817
length of high quality
(start - end)
371 (123 - 493)116 (138 - 253)
definitionCHROMAT_FILE: MSMg01no094_f09.b1 PHD_FILE: MSMg01no094_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:56 2005CHROMAT_FILE: MSMg01no094_f09.g1 PHD_FILE: MSMg01no094_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,554,617 - 29,554,980)(29,634,665 - 29,634,780)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCNNTTTTTTTTTN
CNNCCCNNNNCCCCATATTCCCCCTCATCTATXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGTTTACCTCTCACCTA
AACGCAACCAATCTGAGTGGGTAGAATTTAACCTGGGAGATCTGGCCCTT
GACATCAACAATGTTCTATGTACTATTACATTGATTCGACATCAATCAAT
TTATGTATTTTGGAAACTGATGGGGATTGTCCTGATGGATTAGGAAATAG
CAACCCTGGTTTAAATAACTCTTTACACAGTGGCAAACAGGAAATGTGCT
CAGCTCTGTGTCATATGCTCTATGTTAGCATATCTTAAAAAGCCCATCAC
TTGTCACTCTTCAGCCCTTTGTTTTATCCTTTAGTTTTCTCAGTCTTAAC
CCCAAGACTTTTAACAGTACATTGATTAGCATAATTGTCCCTCATTGTAC
CTATCTTTGGTAATGTGTTTTTGAATATTTGCTGCAAGCTGTTATGGTCA
AATAAAGAAGGAATAGTGGGTTTGGCAGAGACAGGGCACCTGCAGAGTTC
TCTGCGATGCCTAAAAACTGCCCACGTGTTGTAGCATGATTTTGTGCTGA
TGGCACCACATTCTTGGACACTATATTTCTTCACACTGCCGATAAATGTT
GAAAACGTCGCTCCTGAATACTGTTCCCTATTCTCTTCCATACTTTTTGT
TTTTATTCACCCTTTACTACAACTTC
CTTTTTTTTTTTCCTCCTCNTTCTTCCTTTCTNTTCTTCTCCTTCCCCTC
AACCTTCTCCATCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCACATGAGC
ATATTTTCATGGTGAAAGGGGGAGGGAGTGTCAGCCGATAAGGTTGTGGT
ACTAACTTGGAAGTTAACCCTTCATCTTCTTCAATGAATGAACTCTGTTT
TTACAGAGTCAAATTATAATCTACTGATACTAATGGATACCGTAGCTCTG
CTTTGCATATTCCTTTGCATATTTGCATTACAGTATATGTGTTATTGAAG
ATGGCTCCTCTCATTGCCCGTTAAACTTCCAAGTGTTACAATAATATATT
TAGCTACATTACCCTATCGATGTACATACATTGACCCTCATTTTTCAGAA
TTTTTATCACAGATCACTTATCTCTACCTCTTCCCCATTCTTTGTGTGTC
CCGCATAGTATGCCTCATTTGTTACATTTCACCTTATCCCTCTATGAATG
TACCCATATGTATGTATCCCATATTTTTTTACCCATTTTTCCCACCCACA
CTTTTTTCTCTTCTTTGTTTCTCCCCTTGTATTCCCCTTTCCCGCCCTGC
CCCCCTCTTTGTCCCTTTCATTTTTTCACACTGCACCCCCTGACACTTTG
TTTCACCCGTTCTTCTTTCTTTCTTTTTACCCCCCCTTTTATTTCTCTAT
ACCCCCCCGATTTCACCTTATTCCCTTTTTTCCCCCTTCTCCCCTTTTTC
TCGTTTTTACCCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_f09.b1 MSMg01no094_f09.b1 CHROMAT_FILE:
MSMg01no094_f09.b1 PHD_FILE: MSMg01no094_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:56 2005
         (371 letters)



>mm_chr3_29554413_29555183
          Length = 771

 Score =  627 bits (324), Expect = 0.0
 Identities = 354/364 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtttacctctcacctaaacgcaaccaatctgagtgggtagaatttaacctgg 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtttaaatctcacctaaacgcaaccaatctgagtgggtagaatttaacctgg 264

                                                                       
Query: 65  gagatctggcccttgacatcaacaatgttctatgtactattacattgattcgacatcaat 124
           |||| ||||  ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 gagacctggttcttgacatcaacaatgttctatgtactattacattgatttgacatcaat 324

                                                                       
Query: 125 caatttatgtattttggaaactgatggggattgtcctgatggattaggaaatagcaaccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caatttatgtattttggaaactgatggggattgtcctgatggattaggaaatagcaaccc 384

                                                                       
Query: 185 tggtttaaataactctttacacagtggcaaacaggaaatgtgctcagctctgtgtcatat 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 tggtttaaataactctttacacagtggcaaacaggaaatgtgctcacctctgtgtcatat 444

                                                                       
Query: 245 gctctatgttagcatatcttaaaaagcccatcacttgtcactcttcagccctttgtttta 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctctgtgttagcatatcttaaaaagcccatcacttgtcactcttcagccctttgtttta 504

                                                                       
Query: 305 tcctttagttttctcagtcttaaccccaagacttttaacagtacattgattagcataatt 364
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 505 tcctttagttttctcagtcttaagcccaagacttttaacagtacattgattagcataact 564

               
Query: 365 gtcc 368
           ||||
Sbjct: 565 gtcc 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no094_f09.g1 MSMg01no094_f09.g1 CHROMAT_FILE:
MSMg01no094_f09.g1 PHD_FILE: MSMg01no094_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:56 2005
         (116 letters)



>mm_chr3_29634465_29634980
          Length = 516

 Score =  201 bits (104), Expect = 1e-56
 Identities = 113/116 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttcacatgagcatattttcatggtgaaagggggagggagtgtcagccgataaggttgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 316 acttcacatgagcatattttcatggtgaaagggggagggagtgtcaggggataaggttgt 257

                                                                   
Query: 61  ggtactaacttggaagttaacccttcatcttcttcaatgaatgaactctgttttta 116
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 256 ggtactaacttggaagttaacccttcatcttcttcaacgaatgaactctgttttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)