NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCNTTTTNNNNNNNNNN
CCTCNNNCCCCACCTTACGNCTAAATCTATACATTGCGGATGATTAATAT
CACTCACTATATCCCAGAGAAGCACGTGGGAATTCCAAACCAATCACCCC
GTACGTGCGCCCCATGTATTGCATTATTGTGGATCGAGGATGCGGCGAAG
GAGGCGAAGCTGCGTCCAGTCTGACGCTGGAGGTATCGTGCAACTTAGGA
CGCGCCATAGTGTCCCTCCATGCAGCTTCCACCTTGAAAACCGTACGTAT
GTATCACCCTATCCTCTAGTGGTACGAAATTTTTTGCTATTTTGTGCTTG
ACTACTTGTAAGGAGTAAATAAAACATGACCTTGTAACCCATAGATTACA
GTATATGGTTACTGGATGTGTGTGCGGGCATCGCGAGGGGTTAGTGGTTG
TTATCTATCTTCTAGCCTGCGTAGAGATACGGAATCGTATGACAGTTTTC
TATGCGATTAAGTCGTGAAATTATAGCTAATCTCTGCAACAGTAACGACA
TTACGAACCCGTCTATGTTATATTGGTGTCGTTGTACATGAAATAGACAT
GGAGCATCACTTATGCTGGAGAAGTATTGATCGCATACGAATGTAGGTAT
GATGAAACGCGAGAGCATATAGAGCCCGAGAGTTGTGGAGTTTGGCCGTA
TGTTTCTGCCCATATCTCAGGTCTTCACCTGTTATTTGTTTAGAGTATAG
CACACCGATGTTGGTTTCTGTACCAGACAATATTTCTTCCTACATACCAT
CACTCACCTTTCTCCGACATTCACACTATCGCTGATCGGCATTATCGCGC
GAGCAATGTGCATGTTCGCAGTGTCCTGCGTGTGTTGAGTCGCTTTATGG
TTGTCAAGATACATTCCAAGCGAAGCCCTAACCGACAAAACAGATGTTCC
TGATAGTGCGTGTAACGCGCTCCTATTTTCACTGCGTATGCAAGAAGAAT
ACGAAGCGAGTAGTAGN

TGGCGGCCGCCTGTTTCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTAAGTAATAATCAGAAATCTTTAACTAAATATTCTATGGCTTTT
GCCCCAGTAACAATAATATGCTTATCAGAGTTAAGAAAATTTAGAACTTT
AATTTGCAACAGAATTTTATAATAGATTAAATGGTGTTCCAAAATTACTG
AAAATGAAGATAGGTATTTAATTCCTTGGTCAAAATAAATATTATGAAAT
AATAAAAGTTAAATTTGCAAACAGCTTTAATGTCACCAACTGTTTACTTA
TAAAAATACGTGTAAAAACATCTTGGAAACTTTTACTAATACTAATACTA
ATTTTACTAAAGATAATAATAATTATCTTTCAGGTATAATTATGCATATT
TTTCTCTAGGTTTCCAACTTTTCTGCTTTAAGATATTACTAGTTTAGTAG
CAATAATTAGTTTAGGAATAACATTTTAATCAGAGCTACAAAAGGTTTTT
GCACCAATTTTGGAATAATCTGTGTTGGAGCGATGGCTCAGCAGCTAAGG
GCAATGGCTACTCATGCAGAGAACCTGGGTGTGATTCCCAGGACCCATGT
GGCAGCGCGCAATCTTCTGTTGCTCCAGTTCTCAATATGCTCCAGGTATC
CCAGTGGTGTTTACACATGCACGTATTAAAATACCCCCACCA

Query= MSMg01no094_g10.g1 MSMg01no094_g10.g1 CHROMAT_FILE:
MSMg01no094_g10.g1 PHD_FILE: MSMg01no094_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:02 2005
         (484 letters)



>mm_chr3_80589981_80590864
          Length = 884

 Score =  812 bits (420), Expect = 0.0
 Identities = 459/484 (94%), Gaps = 19/484 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaagtaataatcagaaatctttaactaaatattctatggcttttgccccagtaacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaagtaataatcagaaatctttaactaaatattctatggcttttgccccagtaacaat 260

                                                                       
Query: 61  aatatgcttatcagagttaagaaaatttagaactttaatttgcaacagaattttataata 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatgcttatcagagttaggaaaatttagaactttaatttgcaacagaattttataata 320

                                                                       
Query: 121 gattaaatggtgttccaaaattactgaaaatgaagataggtatttaattccttggtcaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gattaaatggtgttccaaaattactgaaaatgaagataggtatttaattccttgatcaaa 380

                                                                       
Query: 181 ataaatattatgaaataataaaagttaaatttgcaaacagctttaatgtcaccaactgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaatattatgaaataataaaagttaaatttgcaaacagctttaatgtcaccaactgtt 440

                                                                       
Query: 241 tacttataaaaatacgtgtaaaaacatcttggaaacttttactaatactaatactaattt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttataaaagtacgtgtaaaaacatcttggaaacttttactaatactaatactaattt 500

                                                                       
Query: 301 tactaaagataataataattatctttcaggtataattatgcatatttttctctaggtttc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 501 tactaaagataataataattatctttcaggtataattatgcatatttttct--------- 551

                                                                       
Query: 361 caacttttctgctttaagatattactagtttagtagcaataattagtttaggaataacat 420
                     |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 552 ----------gctttaagatattactagtttagtagtaataattagttaaggaataacat 601

                                                                       
Query: 421 tttaatcagagctacaaaaggtttttgcaccaattttggaataatctgtgttggagcgat 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 602 tttaatcagagctacaaaaggtttttgcaccaattttggaataatctgtgctggagcgat 661

               
Query: 481 ggct 484
           ||||
Sbjct: 662 ggct 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)