BAC Information

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BAC

Clone NameMSMg01-094H07
Chromosome3 (Build37)
Map Location 85,618,546 - 85,779,236
singlet/doubletdoublet
Overlap geneGlt28d2, LOC100042265
Upstream geneLOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l, 9930021J17Rik
Downstream geneGm1019, Sh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094H07.T7 (MSMg01no094_h07.b1)MSMg01-094H07.TJ (MSMg01no094_h07.g1)
ACCAG311622AG311623
length774678
length of high quality
(start - end)
201 (113 - 313)389 (81 - 469)
definitionCHROMAT_FILE: MSMg01no094_h07.b1 PHD_FILE: MSMg01no094_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:07 2005CHROMAT_FILE: MSMg01no094_h07.g1 PHD_FILE: MSMg01no094_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,618,546 - 85,618,741)(85,778,848 - 85,779,236)
sequence
NNNNNNNNNNNTTTTNNNNNNNCCCCCCCTTNNNNNNNNNNNNNNNNNNN
CCCCTTTANNNCATCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTGCGTACGCGCACCTCCTCAGGACGCCC
CGTGTGCGTTATGCTGTGCTGTCTGGATGCGTTAAACCCCATTTCAGATC
AATTTACCATTTGTGTTCCTGCTGTGCACCTTCAGTGTCTGTGATCTTTT
CCTCCCAAGACATGCATGTGAATGTTAGATCCCTTCATTATCCAAGTCAC
TGTTACTCCTACAACATATGCTGGTCCCTCTGACTTCTAGTTATCCCACC
ATCACTTTAACTCTTATATATTATAATGATTGCTCTTATATCACATATTC
TCTTTGAATCTCCCAATGTCCTCCTGTATTTTTGACCACACACATCAAAA
ACAAAACACTTCATTTCTAAAAGTACAATACTTACACTATTAACATTTAA
TATTCCTCATATATTTTTACATCAATAATCTACACTATTCATAATTCTTT
CTTTCAAAAATAATTTGCCCACCTGTATTCTCCAACCCACAAATGATTCT
ACACTATTGTTTATCTTTTTCTATATGTATTGTAATCCCATTCCGTAGTA
TTTAACCAACAATTTTTGGTATATACCCTTTTTTACACATTTGAAGCAAT
AAACCCCCTTAACTCCTAAAAATTATACCCTATTTTTCCTCCCTATTATA
TTTTTTAAAATTAACTTCCACTAT
GGCGGCGCCTGTTCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTGGCCAATGACAAAGAAGTCAAGAATAGTTGACTGTCTGGGCTGGCC
CACGTAAATCAATCACAGAATCTCTTAAGCAGCCAAGAAACCCAGAATGA
AGTATAAACTCCAGTGGATCTCTCCGTGCACATCTCAGTGTTTTTCAACT
GATCTGTTCAAAAAGACCCAAAAGCATCAAAATATCTGGGAGCATGTTAA
GAATATTCTCAGATCTCAACCTGTGAGATGGCTCAGCGGACAAAGGTGAC
CAGTGGCCTGAGCTTCATCCCTACGGCCCACATGGCGGAAGAAGAGAAGA
CTCCAGCAAGCTGTCCTCTGGCACGAATACAAAATAAACAAGTTGCGATT
AAAAAAAAAAAAAAAGAGTATTTTCAGACCTTATCCCAAAACCGATGGGG
ATCAGAGATTTGAGAGGGCAGCCGGTAATCTGTGTCTGTACAACCCCTGT
ACAGCAATTCTGGTACACAAAGGAAACGTTTAAGAAAGCTGGGTTCACAT
ACTCACATCTTGTCTGCCCTGCCTGAGAGTGATATTTAATGCGTCAGTAA
TATGTTCCAAGAGTTCATATGTGCCTGCGCTTTACCTTTTAACTGTTCAG
TGTATGCCATCTGAATTTTGTATCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_h07.b1 MSMg01no094_h07.b1 CHROMAT_FILE:
MSMg01no094_h07.b1 PHD_FILE: MSMg01no094_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:07 2005
         (201 letters)



>mm_chr3_85618342_85618941
          Length = 600

 Score =  335 bits (173), Expect = 1e-96
 Identities = 191/197 (96%), Gaps = 1/197 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcgtacgcgcacctcctcaggacgccccgtgtgcgttatgctgtgctgtctgg 64
           |||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 205 gaattctgcggacg-gcacctcctcaggacaccccgtgtgtgttatgctgtgctgtctgg 263

                                                                       
Query: 65  atgcgttaaaccccatttcagatcaatttaccatttgtgttcctgctgtgcaccttcagt 124
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgcgttaaagtccatttcagatcaatttaccatttgtgttcctgctgtgcaccttcagt 323

                                                                       
Query: 125 gtctgtgatcttttcctcccaagacatgcatgtgaatgttagatcccttcattatccaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtctgtgatcttttcctcccaagacatgcatgtgaatgttagatcccttcattatccaag 383

                            
Query: 185 tcactgttactcctaca 201
           |||||||||||||||||
Sbjct: 384 tcactgttactcctaca 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 600
Length adjustment: 8
Effective length of query: 193
Effective length of database: 592
Effective search space:   114256
Effective search space used:   114256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no094_h07.g1 MSMg01no094_h07.g1 CHROMAT_FILE:
MSMg01no094_h07.g1 PHD_FILE: MSMg01no094_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:07 2005
         (389 letters)



>mm_chr3_85778848_85779636
          Length = 789

 Score =  737 bits (381), Expect = 0.0
 Identities = 387/389 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttgactgtctgggctggcccacgtaaatcaatcacagaatctcttaagcagccaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gttgactgtctgggctggcccacgtaaatcaatcacagaatctcttaagcagccaagaaa 330

                                                                       
Query: 61  cccagaatgaagtataaactccagtggatctctccgtgcacatctcagtgtttttcaact 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 329 cccagaatgaagtataaactccagtggatctctccgtgcgcatctcagtgtttttcaact 270

                                                                       
Query: 121 gatctgttcaaaaagacccaaaagcatcaaaatatctgggagcatgttaagaatattctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gatctgttcaaaaagacccaaaagcatcaaaatatctgggagcatgttaagaatattctc 210

                                                                       
Query: 181 agatctcaacctgtgagatggctcagcggacaaaggtgaccagtggcctgagcttcatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 agatctcaacctgtgagatggctcagcggacaaaggtgaccagtggcctgagcttcatcc 150

                                                                       
Query: 241 ctacggcccacatggcggaagaagagaagactccagcaagctgtcctctggcacgaatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ctacggcccacatggcggaagaagagaagactccagcaagctgtcctctggcacgaatac 90

                                                                       
Query: 301 aaaataaacaagttgcgattaaaaaaaaaaaaaaagagtattttcagaccttatcccaaa 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  aaaataaacaagttgtgattaaaaaaaaaaaaaaagagtattttcagaccttatcccaaa 30

                                        
Query: 361 accgatggggatcagagatttgagagggc 389
           |||||||||||||||||||||||||||||
Sbjct: 29  accgatggggatcagagatttgagagggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)