Query= MSMg01no094_k10.b1 MSMg01no094_k10.b1 CHROMAT_FILE:
MSMg01no094_k10.b1 PHD_FILE: MSMg01no094_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:23 2005
(236 letters)
>mm_chr3_51501201_51501836
Length = 636
Score = 414 bits (214), Expect = e-120
Identities = 229/234 (97%)
Strand = Plus / Plus
Query: 1 gggacaatggtgactttctcaccaataggaaataccaataagtgcttgctgaattgatgg 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 gggacaatggtgactttctcaccaataggaagtaccaataagtgcttgctgaattgatgg 260
Query: 61 cttctaccttggggaatggtacttacctgctcagccaggatctgctgctgctgctgctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctaccttggggaatggtacttacctgctcagccaggatctgctgctgctgctgctgc 320
Query: 121 tgctgttgttgttgctgctgctgttgctgctgctgcctctgctcccgaaggaactgttgc 180
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgttgctgctgctgctgctgttgctgctgctgcctctgctcccgaaggaactgttgc 380
Query: 181 ttctggtgctccatcagctgggcccgttgatccatcagcatctgcttcatgatg 234
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 381 ttctggtgctccatcagctgggcccgttggtccattagcatctgcttcatgatg 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no094_k10.g1 MSMg01no094_k10.g1 CHROMAT_FILE:
MSMg01no094_k10.g1 PHD_FILE: MSMg01no094_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:23 2005
(535 letters)
>mm_chr3_51599384_51600319
Length = 936
Score = 1006 bits (520), Expect = 0.0
Identities = 532/536 (99%), Gaps = 1/536 (0%)
Strand = Plus / Minus
Query: 1 tgaggtatgcctatttcattttgcctgatctgattgacaaggggtcatgcattgatattc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 736 tgaggtatgcctatttcattttgcctgatctgattgacaaggggtcatgtattgatattc 677
Query: 61 taaggaggatgagctagcaccctgaatttcctaaggacaagacgatgcagttgccagttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taaggaggatgagctagcaccctgaatttcctaaggacaagacgatgcagttgccagttg 617
Query: 121 tccaggctgccttctatcggggccgtcttattaactccgaagctctgctttgccttctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tccaggctgccttctatcggggccgtcttattaactccgaagctctgctttgccttctct 557
Query: 181 tgtgtgttctacacttaaagccaaataagaggtccctaagtccacccctgcctggcatcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgtgtgttctacacttaaagccaaataagaggtccctaagtccacccctgcctggcatcg 497
Query: 241 gggcctttcgaggggacatactaggcacaccgctgctgttggtctgtgcacttgtggcac 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 496 gggcctttcgaggggacatactaggcgcaccgctgctgttggtctgtgcacttgtggcac 437
Query: 301 cgctgtaatgctgataggcccagtctagtgaaaaagc-aaaggcagttctgcgcctcctt 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 436 cgctgtaatgctgataggcccagtctagtgaaaaagcaaaaggcagttctgcgcctcctt 377
Query: 360 ttccattctttgagactgcagtgagggtgactggctcccagcctgatatgggcttgacat 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcccattctttgagactgcagtgagggtgactggctcccagcctgatatgggcttgacat 317
Query: 420 gtggggcagtcctgagttcaattccttggggcctataccatcccacgtaggcagccatcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtggggcagtcctgagttcaattccttggggcctataccatcccacgtaggcagccatcc 257
Query: 480 agccaggatcctggtgcctgcctgcctgccgaaccacggctgctttctccttgttt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agccaggatcctggtgcctgcctgcctgccgaaccacggctgctttctccttgttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space: 486150
Effective search space used: 486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
