Query= MSMg01no094_l03.b1 MSMg01no094_l03.b1 CHROMAT_FILE:
MSMg01no094_l03.b1 PHD_FILE: MSMg01no094_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:27 2005
(589 letters)
>mm_chr3_5420133_5421121
Length = 989
Score = 671 bits (347), Expect = 0.0
Identities = 374/383 (97%), Gaps = 1/383 (0%)
Strand = Plus / Minus
Query: 208 ttgcatatatctgtagggtctcttatgacttgggacttgccaagtaggctctgtagcccc 267
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 989 ttgcatatatctgtagggtctcttatgacttgggacttgcccagtaggctccgtagcccc 930
Query: 268 agaatatggagatctttacttgcccaccactgggatctcaaatat-gttccatgctttgc 326
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 929 agaatatggagatctttacttgcccaccactgggatctcaaatatagttccatgctttgc 870
Query: 327 tacataggatttgggaggatcaaacctgggggtccttgtgctatgaaacacatactttac 386
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 869 tacataggatttgggaggatcaaacttgggggtccttgtgctatgaaacacatactttac 810
Query: 387 caactaaaccatctcctcagttctgaaatatccatttaaacagaaactttgatctaccta 446
|||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 809 caactaaatcatcttctcagttctgaattatccatttaaacagaaactttgatctaccta 750
Query: 447 ctgtagcaacttctgaggagaacatttcttaccaacaacagtagtcataaggtgttattg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ctgtagcaacttctgaggagaacatttcttaccaacaacagtagtcataaggtgttattg 690
Query: 507 agaccttgaaaggagaaatctttaaccttctcaattcccattatacatctccacacagca 566
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 689 agaccttgaaaggagaaatctttaaccttctccattctcattatacatctccacacagca 630
Query: 567 agcagcattgctgctgtggttga 589
|||||||||||||||||||||||
Sbjct: 629 agcagcattgctgctgtggttga 607
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_l03.g1 MSMg01no094_l03.g1 CHROMAT_FILE:
MSMg01no094_l03.g1 PHD_FILE: MSMg01no094_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:27 2005
(534 letters)
>mm_chr3_5306729_5307662
Length = 934
Score = 957 bits (495), Expect = 0.0
Identities = 528/547 (96%), Gaps = 13/547 (2%)
Strand = Plus / Plus
Query: 1 atttcttactcctttatggttgaagttttactttgtgctgaggacaggcttgctcctaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcttactcctttatggttgaagttttactttgtgctgaggacaggcttgctcctaag 260
Query: 61 aagtaaggtcaaacacacaaattcctcttcagctctgtgaagtttttattttgggcataa 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactaaggtcaaacacacaaattcctcttcagctctgtgaagtttttattttgggcataa 320
Query: 121 atataatcacatcaaatcatccatcagattaaaatccttatgaatgctgtgacagagtca 180
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 321 atataatcacatcaaatcatccatcagattaaaatctttatgaatgctgtggcagagtca 380
Query: 181 ggggctggaaagttaggtgtcatggagctgggttcccttctgtgagtagctggaggggat 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ggggctggaaagttaggtgtcatggagctgggttccctcctgtgagtagctggaggggat 440
Query: 241 ctttgaatcataaaatagcaagggaagttaaagtccattgactttccaaaagaagcttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgaatcataaaatagcaagggaagttaaagtccattgactttccaaaagaagcttgg 500
Query: 301 gtggatattgtaggttttaataggaaagtattcaccctagggtattttggaaatctatgg 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gtggatattgtaggttttaataggaaagtattcaccctagggtagtttggaaatctatgg 560
Query: 361 agaaattgctgatgatggtcacagtgatgggcacttgctaatgaca-------------a 407
|||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 agaaattgctgatgatggtcacagtgatgggcacttgctaatgacatttattactgggga 620
Query: 408 gtcaggtattccagacaacttgagtgtgacaattcctacatggagaaaactgtcttttga 467
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 gtcaggtattccagacaacttgagtgtgacagttcctacatggagaaaactgtcttttga 680
Query: 468 atgaattacaattactctgtacagcatttatgtgaagtgattaaacctgtttggcttatg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgaattacaattactctgtacagcatttatgtgaagtgattaaacctgtttggcttatg 740
Query: 528 aggaagt 534
|||||||
Sbjct: 741 aggaagt 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
