Query= MSMg01no094_l09.b1 MSMg01no094_l09.b1 CHROMAT_FILE:
MSMg01no094_l09.b1 PHD_FILE: MSMg01no094_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:29 2005
(291 letters)
>mm_chr3_122780590_122781280
Length = 691
Score = 509 bits (263), Expect = e-148
Identities = 285/293 (97%), Gaps = 4/293 (1%)
Strand = Plus / Minus
Query: 1 atcatcatcaagtttattcagagtctttttt-atttaaaaattcttcttggctcctc-aa 58
||||||||||||||||||| |||||||||| ||||||||||||||||||||| || ||
Sbjct: 491 atcatcatcaagtttattc--agtcttttttaatttaaaaattcttcttggcttttcaaa 434
Query: 59 catgataattttgctttattttcctttcatcttagcattatgatggtagcgcccacagaa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 catgataattttgctttattttcctttcatcttagcattatgatggtagcgcccacagaa 374
Query: 119 taaaaatgcactatgaggatgcagacagtctgttactttagaagttacaaaaaagaaaat 178
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 taaaaatggattatgaggatgcagacagtctgttactttagaagttacaaaaaagaaaat 314
Query: 179 tgaagaattctcagtaagtggcaagagtggccacatgctaatttgttcaatcatgcagca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgaagaattctcagtaagtggcaagagtggccacatgctaatttgttcaatcatgcagca 254
Query: 239 aagagatagataactacttcccaaaatatgattgctagccttatgcctgcatc 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aagagatagataactacttcccaaaatatgattgctagccttatgcctgcatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no094_l09.g1 MSMg01no094_l09.g1 CHROMAT_FILE:
MSMg01no094_l09.g1 PHD_FILE: MSMg01no094_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:29 2005
(345 letters)
>mm_chr3_122626999_122627743
Length = 745
Score = 636 bits (329), Expect = 0.0
Identities = 341/345 (98%)
Strand = Plus / Plus
Query: 1 ctagaaagggaggacgcctgcgcagtccggaaggcggggacgcggggccggggcggggcg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctagaaagggaggacgcctgcgcagtccggaaggcggggacgcgggggcggggcggggcg 260
Query: 61 cggcggcgggggcggggcgcctagtcgattggcggggttacccggaattggttgctagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggcggcgggggcggggcgcctagtcgattggcggggttacccggaattggttgctagac 320
Query: 121 tgggcgcgaagcggtcttcaggtttggtctcagttgcgcggaagtgaaacgacgcggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggcgcgaagcggtcttcaggtttggtctcagttgcgcggaagtgaaacgacgcggaga 380
Query: 181 tgtaggtgagccaggcggcgtctggtaccgacggtgtccgggaacggaggggctcgctcg 240
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tggaggtgagccaggcggcgtctggtaccgacggtgtccgggaacggaggggctcgttcg 440
Query: 241 aagctggaatgaggaaccaagatgaggcacctcagtccgggatgaacgggcttccgaaac 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagctggaaggaggaaccaagatgaggcacctcagtccgggatgaacgggcttccgaaac 500
Query: 301 actcctactggctggatctctggctcttcatccttttcgacctgg 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcctactggctggatctctggctcttcatccttttcgacctgg 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space: 247296
Effective search space used: 247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
