BAC Information

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BAC

Clone NameMSMg01-095E12
Chromosome3 (Build37)
Map Location 132,172,104 - 132,172,394
singlet/doubletsinglet
Overlap genenone
Upstream genePapss1, Olfr375-ps1, Dkk2, LOC100039018
Downstream geneEG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095E12.T7 (MSMg01no095_e12.b1)MSMg01-095E12.TJ (MSMg01no095_e12.g1)
ACCAG312233AG312234
length714716
length of high quality
(start - end)
592 (43 - 634)295 (73 - 367)
definitionCHROMAT_FILE: MSMg01no095_e12.b1 PHD_FILE: MSMg01no095_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:15 2005CHROMAT_FILE: MSMg01no095_e12.g1 PHD_FILE: MSMg01no095_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGTTTAGATCTGTACCTCATTTTAAAATAGTTTGTTGAGTTCTTTA
GATGTGGAGTTAGTTGGTAAAGAGCGTTCCCCAATCTGTGGGCTGCTGTT
TGTCCTACTGACAGTGTCTTTTGCTTTACAGAAGCTTTTTAGTATTAATT
GTGTGCCTGCACTATTGATGTTCTGTTCAGGATGTTGTCTTCTGTGCCAA
TGGGTTCAAGAGTATCCCCCACTTTCTCTTCAGTGCATCTGGTGTTATGT
TGATGTCTTTTCTCCACTTGGGCTTGAATTTTGTGCAGGGTGATAGATGT
GGATCTATTCACATTCTTCTATATAACATCCAGTTAGACCAACACCTTTG
GCTGAAGATGTCTCCCCCATTGTATAGTTCTCGTTTCTTTGTCAAAAATT
AGGTGACCCTAGGTGTTTAGATTTACATCTAGGTCTTCAATTTGATTCCT
TGGATCAGCATGTCTTTTTTTATGCCAATATCATGTGGTTTATATTACTG
CAGCTATGAAGTACAACTTAAGGTCAGGGATGGTGATACCTCCATATGTT
CTTTTATTGAGTAGGATTGATTGAGCTGTCCTGTGTTTTTTTGTTTTTCC
ATATGAAGTTGAGTATTGTTCTTTCAAGGTCTGTAAAGAATTCTGTTAGA
AATTTGGAGGGGAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTATAAGCATTCATCACTTTGGGACGA
GTCTTTGTTGATTTCGTGTTCTGCTTTATTCTGGACTACTGAGGGAAGAG
CCTGGGTTAACATGGGAAAGTAAAAAGAAATGGAGAAATTCAGATAATTC
TGTTGTTATAAACAAGAACCGAGCAATAGAATGGTAGATGGTATCTGAAG
CAAAGCAAAAGAAATGCTTTAAAGATGTAGGGAAATGTACATTTATGTCG
TCATAATAGCTTAGGAGAGGAGGAAATTCTGAAAACAAGAAATAAGAAAC
TACTGCTAGAGTCTTATGCTGCACCCACAGCTAAGGAAACAGGTATGAGA
TGGCAGAGAGCTGTCAGGGCTGTGTCTTTGTGTGAGCACCAGAATGAGCT
CAAGAAACTGAGGAGCTGAGGACACAATAGAATGGCTCTGTTGAGAGTCT
CTGTGGAGCATCTTTCTATTTGTCAAGCTCTCATCTCTCTCTCTCTCTCT
CTCTCTCTCTATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATAGAGAGAGTGAGAGAGTGTGAGTGATAGAGTTGGAG
TCCCAAGATGAATAACATCTTATGTTTTCATTCCTTGGCTTACTTCGTTT
CTCCCGATTATTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_e12.g1 MSMg01no095_e12.g1 CHROMAT_FILE:
MSMg01no095_e12.g1 PHD_FILE: MSMg01no095_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:15 2005
         (295 letters)



>mm_chr3_132171904_132172598
          Length = 695

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctataagcattcatcactttgggacgagtctttgttgatttcgtgttctgctttattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctataagcattcatcactttgggacgagtctttgttgatttcgtgttctgctttattct 260

                                                                       
Query: 61  ggactactgagggaagagcctgggttaacatgggaaagtaaaaagaaatggagaaattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggactactgagggaagagcctgggttaacatgggaaagtaaaaagaaatggagaaattca 320

                                                                       
Query: 121 gataattctgttgttataaacaagaaccgagcaatagaatggtagatggtatctgaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataattctgttgttataaacaagaaccgagcaatagaatggtagatggtatctgaagca 380

                                                                       
Query: 181 aagcaaaagaaatgctttaaagatgtagggaaatgtacatttatgtcgtcataatagctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcaaaagaaatgctttaaagatgtagggaaatgtacatttatgtcgtcataatagctt 440

                                                              
Query: 241 aggagaggaggaaattctgaaaacaagaaataagaaactactgctagagtc 291
           |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 aggagaggaggaaattctgaaaacaagaaagaagaaactactgctagagtc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)