CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGAGTGGCAAGATGTCTTAGAACTTCTCAATATTTATTTAATATTT
CTCAAAGGAAGATTTTACTTTTTGATTAGTCGGTCACAGTATCAATAGAA
ATGCTATTTCTCACACTGGGATTCTAACTTCTCTGGACATGGTAGTTGAT
TCCTATAGACCTCTAACTCTCACAGAGGACACCCACAACTCTGACAGAGA
TTCCATTAAAGTACCAATTAAATCAAATTCTTAAAATATTTTCTGAAAAT
TAATACTTATGAATCTACTGTGTATTAGCAAGCAGGTATATTATTTTTCC
CAATGCTGTTCTAATTGGCCTATATGAAGTTTACTGAAGTGTCCTATGGC
TAATCTCTTCCTTGGCTTCATCAAACAGTACACCTCACTCTCTTGCTTTT
CCTACTTCACTCAGTGAATCTATCTTTTAATGGAATGTGCTTCCATTAAT
TGTATTATTAGTTCATTTCATTAAGTTTAACTCTCAAATAAAATTCTTTG
GAGAATGAGATTATTTTCTACATATTATGTTTCTTCCCATTTGTATGTTT
ATTCTACATATTCAAACCATGACGACGATTTATCTATATGTTTAACAAAT
AGTTGTTGAATTAATGACTGCTTTTCGAGAATTCATTTCAGAGGTCTGAG
GCAATGATA

CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGAGCCATGGAAGATGTATTAGACGT
AGACATCCCTTTTAGTGCTATGTTCCCAGATCTCTGACTCTGTGAATAAT
AATGTCTGGCTGTGAGTCTCTATATTTGTCCACATCTGCTGCTGGAGGAA
GCTTCTATTATGACGACTGAGTAAGGCACACATTTATGAAGATAGCAGAA
CATCACTAGGAGTCATTGTATTGCTATGTTCACTTTGCAGGAAGAGAAGT
ATTTGCTTTTCTCTAAGGCCCCTGGCTTATCACTAGATAGGATTCCAGGA
GAGATTCTCTGAACATTTGATTACATGGAATTTGAGGAGAGGTAAAATGA
GGTAAAACTTTTAATATTGTTCCTCAGGCTTATGACACTTTTACATGTGT
TTCCCACAACAGTAGCCTAGCACTCCAGAATATATGTCTTTTGTGTGCTT
TACATATACTGAAAATACAGAATTTCTTAGAATAACAGATGAAAGAGTCT
CTGCTAGAACACTTAATTAGAAAAATGAGAAGAGAAGAAAAATATTAAAA
CAAAACAAAACAAATTATTCCTCAGATGGAAAAAAAGAGCTTTCACCATA
GGCTGTAACATGTGTTCCAAAAGCTATGGTGTGGTGGACCTGTTCCTTGT
GTTAAACA

Query= MSMg01no095_e16.b1 MSMg01no095_e16.b1 CHROMAT_FILE:
MSMg01no095_e16.b1 PHD_FILE: MSMg01no095_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:15 2005
         (667 letters)



>mm_chr3_44383281_44384347
          Length = 1067

 Score = 1205 bits (623), Expect = 0.0
 Identities = 653/663 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggagtggcaagatgtcttagaacttctcaatatttatttaatatttctcaaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggagtgggaagatgtcttagaacttctcaatatttatttaatatttctcaaa 264

                                                                       
Query: 65  ggaagattttactttttgattagtcggtcacagtatcaatagaaatgctatttctcacac 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 ggaagattttactttttgattagtcggtcacagtatcaatggaaatgctatttctcacac 324

                                                                       
Query: 125 tgggattctaacttctctggacatggtagttgattcctatagacctctaactctcacaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggattctaacttctctggacatggtagttgattcctatagacctctaactctcacaga 384

                                                                       
Query: 185 ggacacccacaactctgacagagattccattaaagtaccaattaaatcaaattcttaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggacacccacaactctgacagagattccattaaagtaccaattaaatcaaattcttaaaa 444

                                                                       
Query: 245 tattttctgaaaattaatacttatgaatctactgtgtattagcaagcaggtatattattt 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tattttctgaaaattactacttatgaatctactgtgtattagcaagcaggtatattattt 504

                                                                       
Query: 305 ttcccaatgctgttctaattggcctatatgaagtttactgaagtgtcctatggctaatct 364
           ||||||||||||| |||||||| || |||||||||||||||||||||||||||| |||||
Sbjct: 505 ttcccaatgctgtgctaattggtctgtatgaagtttactgaagtgtcctatggccaatct 564

                                                                       
Query: 365 cttccttggcttcatcaaacagtacacctcactctcttgcttttcctacttcactcagtg 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttccttggctccatcaaacagtacacctcactctcttgcttttcctacttcactcagtg 624

                                                                       
Query: 425 aatctatcttttaatggaatgtgcttccattaattgtattattagttcatttcattaagt 484
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatctatctcttaatgtaatgtgcttccattaattgtattattagttcatttcattaagt 684

                                                                       
Query: 485 ttaactctcaaataaaattctttggagaatgagattattttctacatattatgtttcttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttaactctcaaataaaattctttggagaatgagattattttctacatattatgtttcttc 744

                                                                       
Query: 545 ccatttgtatgtttattctacatattcaaaccatgacgacgatttatctatatgtttaac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccatttgtatgtttattctacatattcaaaccatgacgacgatttatctatatgtttaac 804

                                                                       
Query: 605 aaatagttgttgaattaatgactgcttttcgagaattcatttcagaggtctgaggcaatg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaatagttgttgaattaatgactgcttttcgagaattcatttcagaggtctgaggcaatg 864

              
Query: 665 ata 667
           |||
Sbjct: 865 ata 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no095_e16.g1 MSMg01no095_e16.g1 CHROMAT_FILE:
MSMg01no095_e16.g1 PHD_FILE: MSMg01no095_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:16 2005
         (573 letters)



>mm_chr3_44512380_44513352
          Length = 973

 Score =  978 bits (506), Expect = 0.0
 Identities = 512/514 (99%)
 Strand = Plus / Minus

                                                                       
Query: 60  ctctgactctgtgaataataatgtctggctgtgagtctctatatttgtccacatctgctg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 ctctgactctgtgaataataatgtctggctgtgagtctctatatttgtccacatctgctg 914

                                                                       
Query: 120 ctggaggaagcttctattatgacgactgagtaaggcacacatttatgaagatagcagaac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 ctggaggaagcttctattatgacgactgagtaaggcacacatttatgaagatagcagaac 854

                                                                       
Query: 180 atcactaggagtcattgtattgctatgttcactttgcaggaagagaagtatttgcttttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 atcactaggagtcattgtattgctatgttcactttgcaggaagagaagtatttgcttttc 794

                                                                       
Query: 240 tctaaggcccctggcttatcactagataggattccaggagagattctctgaacatttgat 299
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 793 tctaaggcccctggcttatcactagataggatcccaggagagattctctgaacatttgat 734

                                                                       
Query: 300 tacatggaatttgaggagaggtaaaatgaggtaaaacttttaatattgttcctcaggctt 359
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tagatggaatttgaggagaggtaaaatgaggtaaaacttttaatattgttcctcaggctt 674

                                                                       
Query: 360 atgacacttttacatgtgtttcccacaacagtagcctagcactccagaatatatgtcttt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atgacacttttacatgtgtttcccacaacagtagcctagcactccagaatatatgtcttt 614

                                                                       
Query: 420 tgtgtgctttacatatactgaaaatacagaatttcttagaataacagatgaaagagtctc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgtgtgctttacatatactgaaaatacagaatttcttagaataacagatgaaagagtctc 554

                                                                       
Query: 480 tgctagaacacttaattagaaaaatgagaagagaagaaaaatattaaaacaaaacaaaac 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgctagaacacttaattagaaaaatgagaagagaagaaaaatattaaaacaaaacaaaac 494

                                             
Query: 540 aaattattcctcagatggaaaaaaagagctttca 573
           ||||||||||||||||||||||||||||||||||
Sbjct: 493 aaattattcctcagatggaaaaaaagagctttca 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)