BAC Information

Click to search

BAC

Clone NameMSMg01-095F23
Chromosome3 (Build37)
Map Location 85,865,479 - 85,866,049
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019
Downstream geneSh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095F23.T7 (MSMg01no095_f23.b1)MSMg01-095F23.TJ (MSMg01no095_f23.g1)
ACCAG312302AG312303
length705839
length of high quality
(start - end)
581 (35 - 615)45 (135 - 179)
definitionCHROMAT_FILE: MSMg01no095_f23.b1 PHD_FILE: MSMg01no095_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:22 2005CHROMAT_FILE: MSMg01no095_f23.g1 PHD_FILE: MSMg01no095_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGATCCGCGGAATTCACTT
ATATTCCAAATAGTTACTCACTTGTGAGGCAGAGGCAGAGGCAGGAGAAT
CTCTCTGAGTTTGAGGCCGTCCTGGTCTATATAACAGTACCAGGCCAGCC
AAGAATACATAGTGAACCCCTGTCTCAGAAACAATTATTGTATGTGTTAG
CATTTTTCTAAGTAATGAGGTAATTCATACTAATTATTAAGACATGTGAA
ATTTAATTTTTAAAAAAAAACTCCATAATAATTTTGTTGTGGCTGAATTA
TCTAAAATGCTACTGAGAATTGGCAATCTTAGCCTACTGACCTTTTCTTC
ATTTCTTTAATACTTCCTTTTTTGTAGCTCACAGACCCAGATATATATAC
CTTTACCTGAGTTTGAGTGAAGAGCCTGCAAGTGGGTTGGCTTGACCCAC
TCCCCAAGATGGTTCTGACCTCATTTGGGAAAATACGTTGGGATTTGACA
AGGGGTTTAATATCCTGAGGAACAACTTTGTCAGTCAGCTTTAAACATTC
TTGTTACATTTATTTGTGGAGAGGGCATATGCTACACCTGGCCGGAGTCT
CGTCTCTCCTTCTACCATGTAGGTCCTAGGGATGGCTCTTAGGTCCCCCG
GCTCGGCACATGCTCCATCTACTGCACTGTCTCCATGGCCCCATCCCTCA
GCCTG
NNNNTTTTNNNNNNNNNNNNNNCCCCNNNNCCCCNNCCCNNCCNCCCCAG
CACTTAAAGCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATGAAGAAAGAAA
CAGATAGGAAGAAAGGAGGCAAGCAGGGATAACGGCAGAGAAAGACAGGA
GGTAGGGAGGGGCAAGTTGCCCAGCAAATCCTTTAAGTGAGATAGAAAAG
AAAAAAAAAAAGAAAGAATTATCCCTCAGGGTTTATTTACATGGTATAGC
CTTTATATTAAAAAAAAAAAAAAATAGGAACAGGCTCAGCGGGTAAAAGT
ACTGATTGTTCTTCCGAAAGTCGGGATTTCAATTCTCAGCAACAACAGGA
GGGCTCACAACCATCTGTACAGTTTTTTTTTACCCCCCCCCCCCCCCGTG
GCTAACTTAATTCCTTCTTTAAAAGGCTCGGACCTTCACCAAAAAAAAAA
ACAGGCGGCGGGGGGGGGGGGGATTACCCACATCTTATATTTAACCCACG
ATTTTATTTTTTTTCGGCACATATTACCTTTATGCTGGGCGTTTGAGTGC
CTTTTACCCCCCAGGCTCTTTGTGAACCCTGCCGTTTACCAAATAAGTTA
TCCCCCATACGCCCCGCCCTTCGCGCCATCTTTTTTTGCGGGGCGAGAGA
TCTTATGATGCGTTTCCGATATCTCGACTGCCCTATGATCACGCGGCGGT
TCCTCACCATAACCAACCTCGCTCTTATTTCCGTAGAGGGGGGAGAGCAC
ACTCTCTTGTGTTCCCATGGTACCCTTTTTTTTCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_f23.b1 MSMg01no095_f23.b1 CHROMAT_FILE:
MSMg01no095_f23.b1 PHD_FILE: MSMg01no095_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:22 2005
         (581 letters)



>mm_chr3_85865269_85866249
          Length = 981

 Score = 1019 bits (527), Expect = 0.0
 Identities = 562/577 (97%), Gaps = 7/577 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcacttatattccaaa-tagttactcacttgtgaggcagaggcagaggcaggaga 64
           ||||||||||||||||| ||| || |||||||||||||||||||||||||      ||||
Sbjct: 211 ggaattcacttatattcaaaaataattactcacttgtgaggcagaggcag------gaga 264

                                                                       
Query: 65  atctctctgagtttgaggccgtcctggtctatataacagtaccaggccagccaagaatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctctctgagtttgaggccgtcctggtctatataacagtaccaggccagccaagaatac 324

                                                                       
Query: 125 atagtgaacccctgtctcagaaacaattattgtatgtgttagcatttttctaagtaatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagtgaacccctgtctcagaaacaattattgtatgtgttagcatttttctaagtaatga 384

                                                                       
Query: 185 ggtaattcatactaattattaagacatgtgaaatttaatttttaaaaaaaaactccataa 244
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 385 ggtaattcatactaattattaagacatgtgaaatttaatttttttaaaaaaactccataa 444

                                                                       
Query: 245 taattttgttgtggctgaattatctaaaatgctactgagaattggcaatcttagcctact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taattttgttgtggctgaattatctaaaatgctactgagaattggcaatcttagcctact 504

                                                                       
Query: 305 gaccttttcttcatttctttaatacttccttttttgtagctcacagacccagatatatat 364
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaccttttcttcatttcactaatacttccttttttgtagctcacagacccagatatatat 564

                                                                       
Query: 365 acctttacctgagtttgagtgaagagcctgcaagtgggttggcttgacccactccccaag 424
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 565 acctttacctgagtttgagtggtgagcctgcaagtgggttggcttgacccactccccaag 624

                                                                       
Query: 425 atggttctgacctcatttgggaaaatacgttgggatttgacaaggggtttaatatcctga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atggttctgacctcatttgggaaaatacgttgggatttgacaaggggtttaatatcctga 684

                                                                       
Query: 485 ggaacaactttgtcagtcagctttaaacattcttgttacatttatttgtggagagggcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaacaactttgtcagtcagctttaaacattcttgttacatttatttgtggagagggcat 744

                                                
Query: 545 atgctacacctggccggagtctcgtctctccttctac 581
           |||||||||||||||||||||||||||||||||||||
Sbjct: 745 atgctacacctggccggagtctcgtctctccttctac 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)