BAC Information

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BAC

Clone NameMSMg01-095G13
Chromosome3 (Build37)
Map Location 79,903,985 - 79,904,475
singlet/doubletsinglet
Overlap genenone
Upstream geneRapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095G13.T7 (MSMg01no095_g13.b1)MSMg01-095G13.TJ (MSMg01no095_g13.g1)
ACCAG312328AG312329
length693687
length of high quality
(start - end)
493 (36 - 528)291 (55 - 345)
definitionCHROMAT_FILE: MSMg01no095_g13.b1 PHD_FILE: MSMg01no095_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:25 2005CHROMAT_FILE: MSMg01no095_g13.g1 PHD_FILE: MSMg01no095_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTG
TAGACACACCTAGAAGTGTAGTGTGTTTCCTAGTTGATTCTAAATTGAGT
CAAGAAGTCAGTGAAGATTAAAGTCCAAAATTGTGAATAACAGAAAATTC
AGATGCTATACTTAGTTCAACTCGTGCTCTAGGGTTTCCCCATTTCAGGT
TAAGCAAGAAAACCTGAAGCACCCACTAATCCAGCAAGGCTTGTAGAAGA
GCTCTAACTGGACCTTCGACCAACAGATCCCTTGAAAAGTTCTTGTTTCT
CTTCTAGCATTAGTGCAAGATGTGGATCCAACCATCACATGGAGAAAGGA
GAGATGAAGTGGTAAAAAAAAAAAATGTGCCTCAGTTGTTTTTGAAGGAT
GCTCTTAGGGGCTTTTCTGGATCACTTCTGCTTATGCCTTCTTGGCCAGG
AAGCAGTCACCTGGCCCCACCTGGAAGCAAGGAGGATAGAGAAAGTAGCT
TTTATTTTTGAAAACCATATGCCCTGCCTAATTTCTCTTTCCACAGAGGA
AGCCAGACCTGAAAGGACAAATGGACTTGGATGCTTGCCCCACATTTCCA
GTGAATACTTTATTCTTTGATATGCCCATCATTCCCTAGTTTTGAAATGC
AGTTCTCATGCGCAATAACAAATTGTGTATTGCTGTACTGGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGGTAGGGCCAGTGACACGCTTGGGCCAGGCTGACAAAGGTGCCTT
GTACCAAGCTTGAAGATGTGAGCTCTGTCTCTAGCACCCATATGGTGAAA
GGATAGAGTCCACATCTGAAAGTTGTCCTTTGACCTCTAGGTGTGGAGGG
TGTCCTGCACACACATACATACCACATGCATGCACCCAAAATTAAGTAAA
TTAATAAAATAATAAGAATTCAAACAAACAGTAATGGTGATTGGCATCCT
TATTGCTTACCTGAAGACATTTAGCCACAATAGGCTTCTTTGCTTTATGC
CCACTCTCCAACAGAGACAGACTGGTACTGCGGGCACTTTTGCAATGCTT
AAGTGTTAAGCTTTAATGTGTGCACTGAACAAGCACATTAAAATATCATC
TGGGGTTCACAGCTATGCGCGATGTGCTTTATTAAGCTTTAACAATTGGC
GCGCCATCTTGATAGTACACTGATCTGCATTTGGCAATCACCTAAACCAG
ATGACAAGCATAACACGCTGACTTTTTACACACTTTAGCCAATAACGGTT
ATACCAATATCCTTAACATATTGCATGTTAATTCATACAAAATTACCACA
CCATCCCGACACCGATTGCTCTTTGATTCTACCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_g13.b1 MSMg01no095_g13.b1 CHROMAT_FILE:
MSMg01no095_g13.b1 PHD_FILE: MSMg01no095_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:25 2005
         (493 letters)



>mm_chr3_79903919_79904811
          Length = 893

 Score =  922 bits (477), Expect = 0.0
 Identities = 487/491 (99%), Gaps = 2/491 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccttgtagacacacctagaagtgtagtgtgtttcctagttgattctaaattgag 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 557 gaattcccttgtagacacacctagaagtgtagtgtgtttcctagttaattctaaattgag 498

                                                                       
Query: 65  tcaagaagtcagtgaagattaaagtccaaaattgtgaataacagaaaattcagatgctat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcaagaagtcagtgaagattaaagtccaaaattgtgaataacagaaaattcagatgctat 438

                                                                       
Query: 125 acttagttcaactcgtgctctagggtttccccatttcaggttaagcaagaaaacctgaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acttagttcaactcgtgctctagggtttccccatttcaggttaagcaagaaaacctgaag 378

                                                                       
Query: 185 cacccactaatccagcaaggcttgtagaagagctctaactggaccttcgaccaacagatc 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cacccactaatccaacaaggcttgtagaagagctctaactggaccttcgaccaacagatc 318

                                                                       
Query: 245 ccttgaaaagttcttgtttctcttctagcattagtgcaagatgtggatccaaccatcaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccttgaaaagttcttgtttctcttctagcattagtgcaagatgtggatccaaccatcaca 258

                                                                       
Query: 305 tggagaaaggagagatgaagtggt--aaaaaaaaaaaatgtgcctcagttgtttttgaag 362
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 257 tggagaaaggagagatgaagtggtaaaaaaaaaaaaaatgtgcctcagttgtttttgaag 198

                                                                       
Query: 363 gatgctcttaggggcttttctggatcacttctgcttatgccttcttggccaggaagcagt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gatgctcttaggggcttttctggatcacttctgcttatgccttcttggccaggaagcagt 138

                                                                       
Query: 423 cacctggccccacctggaagcaaggaggatagagaaagtagcttttatttttgaaaacca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cacctggccccacctggaagcaaggaggatagagaaagtagcttttatttttgaaaacca 78

                      
Query: 483 tatgccctgcc 493
           |||||||||||
Sbjct: 77  tatgccctgcc 67


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)