Query= MSMg01no095_l05.b1 MSMg01no095_l05.b1 CHROMAT_FILE:
MSMg01no095_l05.b1 PHD_FILE: MSMg01no095_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:48 2005
(535 letters)
>mm_chr3_32426080_32427015
Length = 936
Score = 876 bits (453), Expect = 0.0
Identities = 471/477 (98%), Gaps = 2/477 (0%)
Strand = Plus / Minus
Query: 1 gctacacagagaaaccctgtcttgac-aacaaaaaacaaaaaagaaagactgtttcc-ca 58
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 477 gctacacagagaaaccctgtcttgacaaacaaaaaacaaaaaagaaagactgtttccaaa 418
Query: 59 ataaggtggagactgatagtgaacgttgctcactgttgatctctagcggctaatgtactc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ataaggtggagactgatagtgaacgttgctcactgttgatctctagcggctaatgtactc 358
Query: 119 acacgtgtgcacatactatgcaaagcacagcaaagacaggtcagtacctaggggctggca 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acacgtgtgcacatactatgcaaagcacagcaaagacaggtcagtacctaggggctggcg 298
Query: 179 aataactcagtgacagtgtgtttagtgtgcacaaagtccagagtccaatcccagtgataa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 297 aataactcagtgacagtgtgtttagtgtgcacaaagtccagagtccaatcccagtgacaa 238
Query: 239 ctgacataaactggagtcatcagggaagagggaacacccaattgaggaactgtcttcaaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ctgacataaactggagtcatcagggaagagggaacacccaattgaggaactgtcttcaaa 178
Query: 299 taattggcctctgggcaagtctgtagggcattgtcttgattaatgtgtgagatcccagcc 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 177 taattggcctctgggcaagtctgtagggcattgtgttgattaatgtgtgagatcccagcc 118
Query: 359 cactttggaaggtgtcacccctgggcaggtgctccttggttgtataagacagcaagctga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 cactttggaaggtgtcacccctgggcaggtgctccttggttgtataagacagcaagctga 58
Query: 419 gtgaggcatggagaataaactagtaaacagtatttttactgaactctgcttcagttc 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 gtgaggcatggagaataaactagtaaacagtatttttactgaactctgcttcagttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space: 486150
Effective search space used: 486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_l05.g1 MSMg01no095_l05.g1 CHROMAT_FILE:
MSMg01no095_l05.g1 PHD_FILE: MSMg01no095_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:48 2005
(505 letters)
>mm_chr3_32339635_32340539
Length = 905
Score = 930 bits (481), Expect = 0.0
Identities = 499/505 (98%)
Strand = Plus / Plus
Query: 1 agttagagagtctgagtgaaaacggcctgctgtgggaaagcaggttgctgccacccggag 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agttagagagtctgagtgaaaacggcctgctgtgggaaagcaggttgctgggacccggag 260
Query: 61 attcattctcgtttaggcttgctgaggacaagtgaaaggcggttggtccagagcttgcag 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcattctcgcttaggcttgctgaggacaagtgaaaggcggttggtccagagcttgcag 320
Query: 121 gcctcctgtttccttgtctttcttgtgagagatttttgaagatgagactcaaccccttga 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gcctcctgtttccttgtctttcttgtgagagatttttgaagataagactcaaccccttga 380
Query: 181 ctgaagatggactttatagaatgcagtagagctaagtagtgagacctcaaagaacttcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaagatggactttatagaatgcagtagagctaagtagtgagacctcaaagaacttcca 440
Query: 241 caacaaagttagactgagttctgacagtcaaaaaagaaaaaaaggcaatctttgttacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacaaagttagactgagttctgacagtcaaaaaagaaaaaaaggcaatctttgttacat 500
Query: 301 tcccagcattgatgagtgtcctagagcctagggcaagttcagggtgatagtcccttgtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccagcattgatgagtgtcctagagcctagggcaagttcagggtgatagtcccttgtct 560
Query: 361 gtcagggtgaggagaggcagttgtcaccttacctgagcctgtcgctcagtcggcatcatt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 gtcagggtgaggagaggcagttgtcaccttacctgagcctgtcgctcagtcgacatcatt 620
Query: 421 gagggtagatggtacacatgacaacagtttcatatcctgctcttcagactttttgtttgc 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 gagggtagatggtacacatgacaacagtttcatatcctgttcttcagactttttgtttgc 680
Query: 481 tggagtagggggttggctgattgta 505
|||||||||||||||||||||||||
Sbjct: 681 tggagtagggggttggctgattgta 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
