Query= MSMg01no095_l08.b1 MSMg01no095_l08.b1 CHROMAT_FILE:
MSMg01no095_l08.b1 PHD_FILE: MSMg01no095_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:49 2005
(571 letters)
>mm_chr3_7708257_7709228
Length = 972
Score = 864 bits (447), Expect = 0.0
Identities = 482/495 (97%), Gaps = 4/495 (0%)
Strand = Plus / Minus
Query: 7 gaattctttc-attttccccaaatagctcctgcagttccagactatgtacaggaaaaatg 65
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaattctttcaattttccccaaatagctcctgcagttccagactatgtacaggaaaaatg 440
Query: 66 tttgattcatagaacaataagaaatacaactgaaaatcattataaagaggctatttttaa 125
||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 439 tttgatttatagaataataagaaatacgactgaaaatcattataaagaggctatttttaa 380
Query: 126 taagccatcttctggttatctggtatataaattttctttcatgaaattctcacaaaattc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taagccatcttctggttatctggtatataaattttctttcatgaaattctcacaaaattc 320
Query: 186 cagaacttaataattaacaattactgaatgaagtatttgaagaaaactgggttccagtat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagaacttaataattaacaattactgaatgaagtatttgaagaaaactgggttccagtat 260
Query: 246 tccaaatattttacaatttagaaaggtaatactttctaaataagtaaatggg---aaaac 302
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 259 tccaaatattttacaatttagaaaggtaatactttctaaataagtaaatgggaaaaaaac 200
Query: 303 aaacaaacaaacaaactggctctccttttttgctttaagtgttccctaatgtctgctatc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aaacaaacaaacaaactggctctccttttttgctttaagtgttccctaatgtctgctatc 140
Query: 363 tgtacccagtgaggaatctaaaagtgtgtggccatgtgtgcatgcttggaaacctgcttc 422
||| ||||| |||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct: 139 tgtgcccagggaggaatctaaaggtgtgtggccgtgtgtgcatgcttgaaaacctgcttc 80
Query: 423 tctaactggtacaggccagaaagactacctgtgaggaagaatatcaggaaagcaatctaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tctaactggtacaggccagaaagactacctgtgaggaagaatatcaggaaagcaatctaa 20
Query: 483 tactggaaatgatgg 497
|| ||||||||||||
Sbjct: 19 tattggaaatgatgg 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space: 539682
Effective search space used: 539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_l08.g1 MSMg01no095_l08.g1 CHROMAT_FILE:
MSMg01no095_l08.g1 PHD_FILE: MSMg01no095_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:49 2005
(385 letters)
>mm_chr3_7615399_7616184
Length = 786
Score = 687 bits (355), Expect = 0.0
Identities = 376/383 (98%), Gaps = 3/383 (0%)
Strand = Plus / Plus
Query: 1 taag-aaattagtgtccttttgaaaaaaa-cagcccagctctttaaatcacctattgctt 58
|||| ||||||||||||||||| |||||| |||||||||||||||||||| |||||||||
Sbjct: 201 taagaaaattagtgtccttttg-aaaaaaacagcccagctctttaaatcagctattgctt 259
Query: 59 tttaaatacaaattgaacatacagattgacaggggtggatatttcatgaatttttagaat 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttaaatacaaattgaacatacagattgacaggggtggatatttcatgaatttttagaat 319
Query: 119 gttgataattaaataaatgaaataatatgtgaggcctggtacctgtaaccctagctgctc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttgataattaaataaatgaaataatatgtgaggcctggtacctgtaaccctagctgctc 379
Query: 179 aaccagaggcagggagaattaaaagttcagttcctgatttgtttaatgagtgaaaccatg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaccagaggcagggagaattaaaagttcagttcctgatttgtttaatgagtgaaaccatg 439
Query: 239 tctttaaaagtaacaaaataaaacaggactggtgacatagctcaaaggctggtagcttgc 298
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 440 tctttaaaagtaacaaaataaaacaggactggtgacatagctcaaaggctgggagcttgc 499
Query: 299 ttaattttcatgaaccccctagattccatctccagtatcataaaaaagaagacagaagtg 358
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 500 ttaattttcatgaaccccctagattccatctccagtatcataaaaaagaagccagaagtg 559
Query: 359 gaggaggaggaggaggaagagga 381
||||||||||||||||| |||||
Sbjct: 560 gaggaggaggaggaggaggagga 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 786
Length adjustment: 9
Effective length of query: 376
Effective length of database: 777
Effective search space: 292152
Effective search space used: 292152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
