BAC Information

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BAC

Clone NameMSMg01-095O03
Chromosome3 (Build37)
Map Location 82,324,771 - 82,325,003
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
Downstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095O03.T7 (MSMg01no095_o03.b1)MSMg01-095O03.TJ (MSMg01no095_o03.g1)
ACCAG312692AG312693
length701692
length of high quality
(start - end)
594 (36 - 629)239 (106 - 344)
definitionCHROMAT_FILE: MSMg01no095_o03.b1 PHD_FILE: MSMg01no095_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:02 2005CHROMAT_FILE: MSMg01no095_o03.g1 PHD_FILE: MSMg01no095_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTTA
ATTTCCTAAATTGGAAGCCATAATATATATGCAAAGGACCTATAGGGTAA
TGTAATATAAGACCAAAGACATTAAAAATAGGTAGAATTTTTAAAAAGGA
AAGAAAAAAAAAAAGCCCTGGCATGATGTTGTGAGACAAGGGACCTCTAA
AGACACCTTTGAGTGCATTTTCTCTTGGCCATCTACAGCTGGGCATGCAG
CCCAGCCCTAAGAGTAGTTTTGTTTCCTCAGCTGGACTCCCTTACAGGAA
ACTAAATTGTCAATTACAAATGCTTATCGCTTGGAGACTGCTTCTGGACG
AGAGATGGAAGCTTGTGAGTACTTTCTTCTCAGGTTTAAGGCCCTATCTG
GCACAGACCCCTGTAGGCCCTGTGCATGCTGCCTCAGTGCCTCCGTATAT
GCTTCAGTCATGCTGAGTTAGAGGAATTTCTGTCCATCTATGGTGGCCTC
CATCTCCTCTGACTTTCACCTTCTGCCTCCCCTTACACAGGGTTCTCTGA
GACTGAGTAGAGGTAAATAACGGAGACTTCTCATTTAGGAATTATTGTTC
CAAGGTCTCTCACTCTCGGCACAATGTCTGTCTGTTTGTCTCTGTGTTTG
TTCCCATCTGCTGCAAGAGGAAGCTTCTCTGATGATGTCTGAACAAGACA
C
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATCTCAGAGCTGGGATTAAAGAACTGCATCAGCATCACCCAGCTT
ACACAGAACCTTCTCTAATTCAAAAGCTGATTGACAGTACACTGAGTGGC
CCTCCCTTGTTACCAAGCAGTTTCATTTCTAGACACATGACTAAGGAAAG
GCATGCTTATATTTGTAAACACGCAGGTGTGCGTATGCACAGACACACAC
AAACACACACACACACAGTGTTTTCTTTGATACACAGTTGATAGCAGTTG
AAAATTGGGGTCAAACTTTGGTATACATTTGTAGGCCCCTATATAAACTT
ACATATTTACAGAATTTAGTAACACAGAGCAACTGGCAAGCTTAAACTAT
AGCTTTTATGGAACAACAGAAATGAATCTTACAAAGGTCTTGATAAGCAT
AAGAAGCCAAGCAAAGATTTGCATTCTATGTGAATGCGCTTGGGTTTGGA
TTCAGGAACTTTGCAGGTGCTCAAGCTGACCTCTAACCCCCGAACACAGT
GGTTTTCCTCTCTCTGCCTCCTCAGCTTAAGGCACTAGGGCTGGGACTAC
CATAGCACCGAAATTATAAAGTTCACAGACTGTCAAAATAAACCCACGTT
TTTGGAAAGATGGATATCTTACCCACTTTTACATGACAGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_o03.g1 MSMg01no095_o03.g1 CHROMAT_FILE:
MSMg01no095_o03.g1 PHD_FILE: MSMg01no095_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:02 2005
         (239 letters)



>mm_chr3_82324672_82325310
          Length = 639

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ccttctctaattcaaaagctgattgacagtacactgagtggccctcccttgttaccaagc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccttctctaattcaaaagctgattgacagtacactgagtggccctcccttgttaccaagc 273

                                                                       
Query: 64  agtttcatttctagacacatgactaaggaaaggcatgcttatatttgtaaacacgcaggt 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agtttcatttctaaacacatgactaaggaaaggcatgcttatatttgtaaacacgcaggt 213

                                                                       
Query: 124 gtgcgtatgcacagacacacacaaacacacacacacacagtgttttctttgatacacagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 212 gtgcgtatgcacagacacacacaaacacacacacacacagtgttttcattgatacacagt 153

                                                                
Query: 184 tgatagcagttgaaaattggggtcaaactttggtatacatttgtaggccccta 236
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 152 tgatagcagttgaaaattgggatcaaactttggtatacatttgtaggccccta 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)