BAC Information

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BAC

Clone NameMSMg01-095O10
Chromosome3 (Build37)
Map Location 64,496,291 - 64,496,577
singlet/doubletsinglet
Overlap genenone
Upstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
Downstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095O10.T7 (MSMg01no095_o10.b1)MSMg01-095O10.TJ (MSMg01no095_o10.g1)
ACCAG312706AG312707
length699700
length of high quality
(start - end)
317 (43 - 359)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no095_o10.b1 PHD_FILE: MSMg01no095_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:04 2005CHROMAT_FILE: MSMg01no095_o10.g1 PHD_FILE: MSMg01no095_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:04 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCAGCTCTGAGCCCCATTTTTTAGTGTTGTTACTTGATTTTCT
GGAGCCCACTATCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCTTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTGTTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGCTTTATGAG
GTCCCATTTATCGATTCTCTATCCTACTGCACAAGCCATTGCTGTTCTAT
TGAGGAACTTTTCCCTTGTACCCATATCTTTGAGGCTTTTCCCTACACTC
TCCTCTATAAGTTTCAGCGTCTCTGGTTTTAAGTGGAGTTCCTTAATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTC
TTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTATTGAAAATGCTG
TCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAACAACC
ATAGGTGTGTGGGTTCACTTCTGGGCCTTCAATTCGGTTCCATTTGTCTA
CTTGTCTGTCGCTATACCAGTACCATTGCAGTTTTTATCACAATTGCTCT
GTAGTACAGATTTAGGTCAGACATGGAGTTTCCACCAGAGTTTCTTTTA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTAGAGACTGTGGGACCTTTAGCAA
GGGAGTTGTGTAGCTTACAGTGTGCTTCTTTCCATCCCAGACCATCTTAT
CATTTTACATGATTACTCTTGTGGGTTATGTGAAAAAGACAAGTGATTTA
TTAGTTTCTTCAACAAAACTGAATAGAAATGTAAATAAACCTACACTAAC
ATATTTCTAGAAACCAAACCTGTCTATGTCACCTCTACTGAGCAAGCTGT
CACAGCAGTCCAAGTCTCAGTCACTGTGCAATGCATGTGCCTTCAATTCT
TGGAACCTTAAGACAATTTTAGGACTGTCTCCTAGTTAGTTTTCAGTAAA
GTTCAAAAACATGTACTTAGAAGATTTTATGATTTTATTCATATTTCCCA
TTTCATGTGTTTTCATTGGTATTTCCTTATGCGCATTGTTGTAAGTCTTT
TCCAACTGCAGTAGGAAAAACAGTATTATTCTTCATTCACACTGCAAAAA
AACATTTAATAACTTGATAGATGTTAATTACTTTGCCATGCATTGCTTGT
ATCATTAATAACAAAGGATTCCAAGGTTGTCTTTTGTCAGAAATAAATAA
TCTAACTGAATGACTATTTATAGAAATTGACTGTCTCTACCTGGTTTCTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_o10.g1 MSMg01no095_o10.g1 CHROMAT_FILE:
MSMg01no095_o10.g1 PHD_FILE: MSMg01no095_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:04 2005
         (286 letters)



>mm_chr3_64496091_64496777
          Length = 687

 Score =  470 bits (243), Expect = e-137
 Identities = 276/287 (96%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtagagactgtgggacctttagcaagggagttgtgtagcttacagtgtgcttctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 201 tttgtagagactgtgggacctttagcaagggagttgtgtagcttatagtgtgcttcattc 260

                                                                       
Query: 61  catcccagaccatcttatcattttacatgattactcttgtgggttatgtga-aaaagaca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 catcccagaccatcttatcattttacatgattactcttgtgggttatgtgacaaaagaca 320

                                                                       
Query: 120 agtgatttattagtttcttcaacaaaactgaatagaaatgtaaataaacctacactaaca 179
           |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 321 agtgattttttagtttcttcaacaaaactgaatagaaatgtaaacaaacctactctaaca 380

                                                                       
Query: 180 tatttctagaaaccaaacctgtctatgtcacctctactgagcaagctgtcacagcagtcc 239
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tatttctagaaaccaaacctgtctatgtcacctctactgagcaggctgtcacagcagtcc 440

                                                          
Query: 240 aagtctcagtcactgtgcaatgcatgtgccttcaattcttggaacct 286
           |||| | ||||||||||||||||||||||||||| | ||||||||||
Sbjct: 441 aagttttagtcactgtgcaatgcatgtgccttcagtgcttggaacct 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space:   187806
Effective search space used:   187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)