BAC Information

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BAC

Clone NameMSMg01-095P21
Chromosome3 (Build37)
Map Location 125,356,560 - 125,356,870
singlet/doubletsinglet
Overlap geneNdst4
Upstream geneLOC668820
Downstream geneUgt8a, Arsj, Camk2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095P21.T7 (MSMg01no095_p21.b1)MSMg01-095P21.TJ (MSMg01no095_p21.g1)
ACCAG312775AG312776
length7021,006
length of high quality
(start - end)
315 (43 - 357)---
definitionCHROMAT_FILE: MSMg01no095_p21.b1 PHD_FILE: MSMg01no095_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:11 2005CHROMAT_FILE: MSMg01no095_p21.g1 PHD_FILE: MSMg01no095_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACATGTGCTTCAGAATGAGGGAAAAATGTTGGTTTAGGTTGAGAAG
CCCAATAGAGAATCCTTTTAATGTGATTATAATTGAGATGATTATGACTT
CTCTACCTGGCATGTCAGTAGACCACACTTGATTGGGGATGGCAATGGGG
GTTAATGGGAGGTAAAGGAGGATGAAATCACTGTTGTCCATTTTGACAGG
AAATTTTGATGTTGTATTTGTTTCACATTTGTTGATTGATCGATGATTGA
TTGATGGTAGCAGCTACATCATAGATATGAAGGTCAGGGGACAATCTGCA
GGAGTCAATTCTCCGTTTCCATGTGGTTTCTGAAGATTCTATTCAGCTCC
TCAGACTAGGCCACCAGAGAGTTTACTTACTAAGTCTTCTCACTAGCCCT
GCTTGTGTTCTGTATTATGACCAATTGCTGCTACCTTTAGCCATTCCTTC
TTCTGAGATTTTGAGAATACACAAACATCCAAAAGTCTCTCATTTCTGTT
CTGTTCATACCAGCCAAGGTTCACTAGTGCCTACTTTGCAGAGTTAGTTT
TCCTCTCCCATCATCTGCTACAATGGGTCAGGGTCTTGACCGTGTGCGAT
TCTCCTAGGAACATTGAGAGCCCTTCCCTTATATAATTACCCTTCTCTTT
CT
TTTATTATAGTTTTTNTTTTTTAACCCTACTCTTCCCCCTAATCNNNNCA
AAAACATAAAAAAACAAAGACCTTCAAAAACTTTCTCAAAAAGGAAANTT
CCCTTTTCCAAAAGAAAAGCCGAAGGGNNNTTTCCTCTTCTCCCAAAAAA
AAAAGGAGAGAGGTCCCCCTNCAAAAATAAAANGCAAAACTTTTTTTCCC
CCCAAAAAAAAGGGGGGTNNTTTTAATGATTAAAAAATATAAAAAAAAAA
GGGGGGGAGAAAAGAAAGAAAAATAATATTTTTTTTATTCCCCCCCCCCC
CAAAAAAAAAAAAAAGGAGGGGGANCTTCTTTTAAAAAATAAAAAAATCT
ATAAAAAATAAAAATAAAAAAAAAAACAAATAATATAATAACACACAAAA
ACACAAAACCAAAAACAACCCAACAAAAAACAATAATAAAAAAACCAACA
AAAAAATCATAAACACACAACAAAACAAATTAAACTTTTTTTTTTTCCCC
CCCCCCCCCCCCACACCGGTATTGTATATAACACAAAAATATCCACACCA
ACAAACACTCCCCCCCAAAAAAAAAAAAAAAAAAAAAAAAGGGAGGGGGG
GGGGGGGGACAACACCATATCCACACAAAACAAACACTACAACAAAACCA
CACACCCCAACAATTAACACCCCGAATCACCCCACACACAAAAACACCCC
TTATAACCCCCCCAACCAACAAATACCAACACCACCCCTTACAACAACAA
TAAAAAACTAACCCCCCCATACCCCCCTCCCCCACGCCCCCCCCATACAA
AACATGACACGCGACCCGGCCCGGAAACCACAAAATACACCAACCACACA
ATAAACGCAAACACCCCTTACGCACCCACCACCACGACAACTCCAACTCC
CACACACAACACCCACCCCCGCTAAAAAACACCATACCACCACCTCCTCA
TAATATAATCATACCAAACATACACGCAATTCACTTATCCTTACAACTAC
AACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_p21.b1 MSMg01no095_p21.b1 CHROMAT_FILE:
MSMg01no095_p21.b1 PHD_FILE: MSMg01no095_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:11 2005
         (315 letters)



>mm_chr3_125356356_125357070
          Length = 715

 Score =  555 bits (287), Expect = e-162
 Identities = 305/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcacatgtgcttcagaatgagggaaaaatgttggtttaggttgagaagcccaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcacatgtgcttcagaatgagggaaaaatgttggtttaggttgagaagcccaat 264

                                                                       
Query: 65  agagaatccttttaatgtgattataattgagatgattatgacttctctacctggcatgtc 124
           ||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||
Sbjct: 265 agagaatccttttaatgtgattacaattgagatggttatgatttctctacctggcatgtc 324

                                                                       
Query: 125 agtagaccacacttgattggggatggcaatgggggttaatgggaggtaaaggaggatgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtagaccacacttgattggggatggcaatgggggttaatgggaggtaaaggaggatgaa 384

                                                                       
Query: 185 atcactgttgtccattttgacaggaaattttgatgttgtatttgtttcacatttgttgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 atcactgttgtccattttgacaggaaattttgatgttgtatttgtttcacattggttgat 444

                                                                       
Query: 245 tgatcgatgattgattgatggtagcagctacatcatagatatgaaggtcaggggacaatc 304
           |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 tgattgatgattgattgatggtagcagctacatcatagatatggaggtcaggggacaatc 504

                      
Query: 305 tgcaggagtca 315
           |||||||||||
Sbjct: 505 tgcaggagtca 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)