Query= MSMg01no096_a08.b1 MSMg01no096_a08.b1 CHROMAT_FILE:
MSMg01no096_a08.b1 PHD_FILE: MSMg01no096_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:13 2005
(448 letters)
>mm_chr3_125089905_125090749
Length = 845
Score = 553 bits (286), Expect = e-162
Identities = 306/314 (97%), Gaps = 3/314 (0%)
Strand = Plus / Minus
Query: 1 gtgttttagctcttgggctgtggatgggacatcaccttgcagtcactggcttatatccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtgttttagctcttgggctgtggatgggacatcaccttgcagtcactggcttatatccct 252
Query: 61 attcttcttcttacatcagaccctacctatctcatatgcaactagaaagcctcttttttt 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 a---ttcttcttacatcagaccctacctatctcatatgcaactagaaagcctcttttttt 195
Query: 121 aaaaattagatattttatttatttacatttcaaatgctatcccgaaagacccttataccc 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 194 aaaaattagatattttatttatttacatttcaaatgctatcccgaaagttccttataccc 135
Query: 181 tccccctgccctgctcccctacccaaccactcccacttctcgacactggttttccacttt 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tccccctgctctgctcccctacccaaccactcccacttctcgacactggttttccacttt 75
Query: 241 actgggacataaaatgtttgcaaaaccaaggggcctctcttcccaatgattgccgactag 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 actgggacataaaatgtttccaaaaccaaggggcctctcttcccaatgattgccgactag 15
Query: 301 gcaatcttctgcta 314
|| |||||||||||
Sbjct: 14 gccatcttctgcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 845
Length adjustment: 10
Effective length of query: 438
Effective length of database: 835
Effective search space: 365730
Effective search space used: 365730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_a08.g1 MSMg01no096_a08.g1 CHROMAT_FILE:
MSMg01no096_a08.g1 PHD_FILE: MSMg01no096_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:13 2005
(491 letters)
>mm_chr3_124936957_124937849
Length = 893
Score = 797 bits (412), Expect = 0.0
Identities = 474/496 (95%), Gaps = 8/496 (1%)
Strand = Plus / Plus
Query: 1 aaaattattttctgattcccatttgtgc-caggtatacacatggtacacatagttgcatg 59
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct: 201 aaaattattttctgattcccatttgt-ctcaggtatacacatagtacacatagttgcatg 259
Query: 60 tgggcaaatcaatcatacacatgaaattttaaaaaaattctgaaagtaaaatgaatttct 119
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 260 tgggcaaatcaatcatacacatgaaatttttaaaaaattctgaaagtaaaataaatttct 319
Query: 120 ttgttctgattccttgatcattcacacttttatgtttatattt-tgtttgtgtgtttatt 178
|||||||||||| |||| |||||||||||||||||| |||||| ||||||| ||||||||
Sbjct: 320 ttgttctgattctttgaccattcacacttttatgttcatatttgtgtttgtatgtttatt 379
Query: 179 tatgctgctatagcacattgatattgagtggggttctaaacacattcat-aaaaatatca 237
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 tatgctgctatagcacattgatattgagtggggttctaaacacattcataaaaaatatca 439
Query: 238 aagtttgaaatcttatataaccaatagaatatctttttcttttcttcctaagactagatg 297
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 440 aagtttgaaatcttagataaccaataaaatatctttttcttttcttcctaagactacatg 499
Query: 298 gtaaaaa--cccgcacaaacagcttcaaagatgatgctttcttaaattacatttaaagct 355
||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 500 gtaaaaaaaccc--acaaacagcttcaaagatgatgctttcttaaattatgtttaaagct 557
Query: 356 atcaagaggctgtgattagaggtcaactgaaagcaggcatacctttattgtaaggtcagt 415
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 558 ataaagaggctgtgattagaggtcaactgaaagcaggcatacctttattgtaaggtcatt 617
Query: 416 acaggatcttgagtgatacctaatttaaagtccatgaaaataaattgaaagatcactttt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acaggatcttgagtgatacctaatttaaagtccatgaaaataaattgaaagatcactttt 677
Query: 476 tatgaattcataatgg 491
||||||||||||||||
Sbjct: 678 tatgaattcataatgg 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 893
Length adjustment: 10
Effective length of query: 481
Effective length of database: 883
Effective search space: 424723
Effective search space used: 424723
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
