BAC Information

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BAC

Clone NameMSMg01-096G05
Chromosome3 (Build37)
Map Location 70,097,590 - 70,097,843
singlet/doubletsinglet
Overlap genenone
Upstream genePpm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
Downstream geneLOC100041384, LOC625868, LOC670542, EG625901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096G05.T7 (MSMg01no096_g05.b1)MSMg01-096G05.TJ (MSMg01no096_g05.g1)
ACCAG313076AG313077
length719752
length of high quality
(start - end)
345 (70 - 414)256 (68 - 323)
definitionCHROMAT_FILE: MSMg01no096_g05.b1 PHD_FILE: MSMg01no096_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:43 2005CHROMAT_FILE: MSMg01no096_g05.g1 PHD_FILE: MSMg01no096_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGAATTC
TTTGTTCATTCCCTGAACCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGTTCTTATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCCACT
TAGATTTGACCTTACTACAAGGAGATAAGTATGGATCGATTCGCATTCTT
CTACAAGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGCCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCATTTCTATTCCATTGGTCTACT
TGTCTGTCTCTATACCAGCACCAATGCATCTTTTATCCCAATTGCTCTGT
AGTAAAGCTTTAGGTCCGGCATGGTGATTCCTCCCTAAGTTCTTTTATTC
TTGAGAACACTTTTTCTAC
TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGGAAACTTCTATGGAGTAGGTGTATAGGGAG
GGAGCTGATAATCATAAGAAAAAGCCAAGGAAAGAATTCTAGAAAAATTT
TCCTCTGGGTTGGTTTTGAATTATATATAGAAACTCAGCAAGGAGAAGAG
ATGGAGGATGGGATGCGCATGCAGACACCAAGTCTTACAGGGAGCCCAAA
GTGTTTAATGGAACAGGACTGTGCACTCAGTAGCTAATGTGAATGCAATT
AGGATCCTTTTTTAACATAATGGTAATAATAATAGAAATAAAGGAAAATC
ATAAGTAAAGCTATGGGAAATATGATTGAATATATGAAGGTAATAGTTCT
CTTTCTCTGTTTCTCTCTCCCTCTCCTTCTCCTCCTCCTCCTCCTCCTCC
CCCTCCCTCTTTATATATTTCTTCTTCTTCCCGATATACCGCTACCTCTT
GTGTCTCTGCGTCTCACTCCCCTTTCTATCTATTTGTTATTCTCCCCCGT
CTATATGCCCATTGACTTAGCCGTCTCGCGTCGTTCCATACATCACTCGT
TTCCCTAATTCCTATACTCCTTACTGTTTCTTGTATGTGACCTTTAGTGT
TTTTGTAGTTCGCATTCCAACTCTTGTCTTATTACTTTCTTACCATCGTT
TTTTCCTTTTCTCTTACTTCTAGTTATCCCGCTCCTGTCGCCTAGTTTAT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_g05.g1 MSMg01no096_g05.g1 CHROMAT_FILE:
MSMg01no096_g05.g1 PHD_FILE: MSMg01no096_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:43 2005
         (256 letters)



>mm_chr3_70097390_70098045
          Length = 656

 Score =  468 bits (242), Expect = e-136
 Identities = 251/254 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaaacttctatggagtaggtgtatagggagggagctgataatcataagaaaaagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggaaacttctatggagtaggtgtatagggagggagctgataatcataagaaaaagcca 260

                                                                       
Query: 61  aggaaagaattctagaaaaattttcctctgggttggttttgaattatatatagaaactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaagaattctagaaaaattttcctctgggttggttttgaattatatatagaaactca 320

                                                                       
Query: 121 gcaaggagaagagatggaggatgggatgcgcatgcagacaccaagtcttacagggagccc 180
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 321 gcaaggagaagagatggaggatgggatgcgcatacagacaccaaggcttacagggagccc 380

                                                                       
Query: 181 aaagtgtttaatggaacaggactgtgcactcagtagctaatgtgaatgcaattaggatcc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtgtttaatagaacaggactgtgcactcagtagctaatgtgaatgcaattaggatcc 440

                         
Query: 241 ttttttaacataat 254
           ||||||||||||||
Sbjct: 441 ttttttaacataat 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)