BAC Information

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BAC

Clone NameMSMg01-096H22
Chromosome3 (Build37)
Map Location 47,993,112 - 47,993,528
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383850, LOC100039426, LOC666202
Downstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096H22.T7 (MSMg01no096_h22.b1)MSMg01-096H22.TJ (MSMg01no096_h22.g1)
ACCAG313158AG313159
length734782
length of high quality
(start - end)
417 (76 - 492)299 (84 - 382)
definitionCHROMAT_FILE: MSMg01no096_h22.b1 PHD_FILE: MSMg01no096_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:52 2005CHROMAT_FILE: MSMg01no096_h22.g1 PHD_FILE: MSMg01no096_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTCCTACTTACGAATAGAAAGTGCTATGATCTCACTTGTGT
CCTATCTTCTGGCCCAGGAGTCTCAATTGCAAATTCCAATAGAGAGTTTT
GCCATCTTATAGCAATATATCTTGAGATTCTTTGAAGTTTCTATAGTTAT
TGGTTCAGAAGACAATGTTGACTTTAAGAAAAGAATCAGATATTATCTGA
AACAAAAAAAATTATTTATCGGTTTTCATTCAAATAGAGTAATTTTCATT
CTTTATTACATAATCAGTCTTGATTGTTTGTGCTGTAGATTTTCATAGTA
AATCACAGGCATGCCTAATATTAGACTAACAAGAATGCAGTACGTTCATT
ATATAATATACAAAAGATGTACCTTTTGTCCCATGAAAGGACATTCACCA
TATCCTCCAAAGGTATTTGTACAATGAATGTGAATAATAGATGTCGGTCA
ACTTGATGGCAAGACCCATTAAGATTACAGATACCTAGGGAAAACCACCT
ACTATGTTGCAAAATATGTCTTCAGAGTTTATAAAAATGCGCTCACCACA
TGTTCACACCCGTAATATGTTTGCAGATTTCTTATAACACTATACCTTCC
CATGAAAGAAGCCCGTAGGTGTGTGCACATAAATGACGGCTATATTCAAA
ATAACTTTGCAGTATACCCGCCCTATTTGCTCAA
CCTTTCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGACAGGAACAAT
TATGGGTCAGAGTTGTGATTGTGGGACTGCAACTCCATCCCTCACTTGAT
GCCCTGTCTTCCTATGGAGGTGGGCTCTATAAGTTCCCTGTCCCTATTCT
AGGTCCCTCTTTGAGTCCTGAGAGTCTTTCACCTCCCAGGTCTCTGGTGC
ATTCTGGAGGGTAGGCCCCCAGACCTCCTATCTCCCAAGGTTGCATGTTT
CCATTCTTTCTGCTAGTCCTCAGGGCTCCAATCCTTTTCCCTCACCCTGG
CATGGAAAGTGGATAGGGAGGGTTGGAGTGGGAGGCCCGGCTTTTTCCTC
CTCTCTTTCCTCTTTTCCTTTTTTTCCCCCCCCCCCCCTCTCTTTTCTCC
TTTCGCTCCTCCTCCCCCTATTTTTCTTCCCCTTCCTCCCTTTTCCTTAC
CCCCCTTCCCCTCCTTTTCCTTTCGTTCCCTTCGCTTTTTTTCCCCCGCC
GTTTATATTCCCCTCCCCTCCCTTTTTTTCCTCATCCCTCTTCCCCCCCC
CTTTTTTCCGTCTCCTCCCTCTTGTCTTATTACCCCCCCTTCCCTCCATT
TTTACCCTTTTCTCCGTCGTCCTCCACCTCCTTTCTACCCGGTTCCCCCT
CCCGACTCTGCACTTCCCCCCCCTTCCCTCCCATCTTGCTCCCTTCCTCC
CCCTTTTCCCCCCACCCTCTCTTCCCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_h22.b1 MSMg01no096_h22.b1 CHROMAT_FILE:
MSMg01no096_h22.b1 PHD_FILE: MSMg01no096_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:52 2005
         (417 letters)



>mm_chr3_47992912_47993728
          Length = 817

 Score =  783 bits (405), Expect = 0.0
 Identities = 414/417 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaagtgctatgatctcacttgtgtcctatcttctggcccaggagtctcaattgcaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaagtgctatgatctcacttgtgtcctatcttctggcccaggagtctcaattgcaaatt 260

                                                                       
Query: 61  ccaatagagagttttgccatcttatagcaatatatcttgagattctttgaagtttctata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaatagagagttttgccatcttatagcaatatatcttgagattctttgaagtttctata 320

                                                                       
Query: 121 gttattggttcagaagacaatgttgactttaagaaaagaatcagatattatctgaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttattggttcagaagacaatgttgactttaagaaaagaatcagatattatctgaaacaa 380

                                                                       
Query: 181 aaaaaattatttatcggttttcattcaaatagagtaattttcattctttattacataatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaattatttatcggttttcattcaaatagagtaattttcattctttattacataatc 440

                                                                       
Query: 241 agtcttgattgtttgtgctgtagattttcatagtaaatcacaggcatgcctaatattaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcttgattgtttgtgctgtagattttcatagtaaatcacaggcatgcctaatattaga 500

                                                                       
Query: 301 ctaacaagaatgcagtacgttcattatataatatacaaaagatgtaccttttgtcccatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 501 ctaacaagaatgcagtacgttcattatataatatacaaaagatgtagtttttgtcccatg 560

                                                                    
Query: 361 aaaggacattcaccatatcctccaaaggtatttgtacaatgaatgtgaataatagat 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 aaaggacattcaccatatcctccaaaggtatttgtacaatgaatgtgaataagagat 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)