BAC Information

Click to search

BAC

Clone NameMSMg01-096H24
Chromosome3 (Build37)
Map Location 76,034,114 - 76,034,463
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneSerpini2, Wdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096H24.T7 (MSMg01no096_h24.b1)MSMg01-096H24.TJ (MSMg01no096_h24.g1)
ACCAG313162AG313163
length742731
length of high quality
(start - end)
142 (167 - 308)350 (131 - 480)
definitionCHROMAT_FILE: MSMg01no096_h24.b1 PHD_FILE: MSMg01no096_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:52 2005CHROMAT_FILE: MSMg01no096_h24.g1 PHD_FILE: MSMg01no096_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTTGCGGCGCTAAANGAANNACCNAGTGNTCATTCCGCTGAAATNN
CNGCCTTTTAAAGTCATTACCTTTNAANAGGATTATTTGGNTCTCTAGTG
TCTTAACTTCTTGTTTTCCTTGCATATATTGGGTATTAGCCCTCTATCAA
ATGTATGGTTGGGAAAGATCTTTTCTAAATCTGAGCGTTGCTGTTTTGTC
TTCTTGACAGTGACCTTTGCCTTACAGAAGCTTTTTAATTTCATGTGGTC
TCACTTGTCAATTGTTGATCTTATGATCCATTGTTATTCAGTTCAGGAAA
TTTTCCCCTATGTTTAATGGTTCAAGGCTCTTTCCTCAATTCTCTTCTAT
TATATTTTTTTAAACTGGCTTTGTTTGGAAGACCTTGATCCAAATGGACT
TGAGCTTTGTAAAAGAGATAAAAATGGATCTAATTGCATCCTTCTACATG
CTGACAACCAGTTGAACCAGCCCCATTTTTTAAAAATGCTGGCTTTTTCC
CTCCCCACTGGATGATATTGGCTTATTTGTCACAGATGAACTAACCACAG
GTGTGCGGCGTTTATTTCTGGGTCTTTAATTCTATTCCACCGATCTATCT
GCTTGTCTTTTTACCAACACCATGCTGGTTTTATCCCTATTTTTCCGTAC
TATATCTTGTGGCCAGTGCATAGTTATTCCCTCACAGCCCTTTTTTTATA
GCTCGACACAACATTTTTTTCCCACCCCGAGCTTTTCTGTCG
ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCGAAACACAATGAGATAAAGCATTTACTTTTCTTTT
GACTCATTTGTGTAAAATGTATGATCTTAGATTATCTGAGTTATTGTTCA
CATCATTATTAAATGTATACCTTGTACTCATTTTTAATATATCCATGTTT
GATGAGTGGTATTGATTGTCAATTTGAGTGGATTTAGTAATCTAGGAAAC
ACAACTATGGGGGCCTCTGTAGGAATGTAGGGAGGAGTAACTTAGAAAAG
CTGACCCTGACTAGGGCTAGTATGCTTCACCTGGCAGAGTACATAGAACA
GGGTTCAAGGTTATTGTTGTGTGAACAGGTCTCCCTTTGCCTCATATTTC
TCAGAAAGTGCGCACATATCTCTGTAGTTTATTACCAGAAGACTCCAGGT
TCTTCACGCTCATTGTATGGACTCCATGTCAGCGTGCCTGTGATGCTTTT
AGCACTGAATTTGGACTAATGACATTTCACACACTTGGAATGATTAGTTA
CTGGATTTTCAACCTCTTTGATACATAGATGAGCACTGTGAACCTACCAG
TTCTATATGTAAACTAACTCAATAATGTCCCTTTAACCCTATATTTTTGT
GCCCCCTTACTTTATCTTACGAGAATGCTCCGCACCCTTTAACATGGCAG
CAACACCCTTACTCCAACCTCTTACCTACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_h24.g1 MSMg01no096_h24.g1 CHROMAT_FILE:
MSMg01no096_h24.g1 PHD_FILE: MSMg01no096_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:52 2005
         (350 letters)



>mm_chr3_76033914_76034663
          Length = 750

 Score =  615 bits (318), Expect = e-180
 Identities = 342/350 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatctgagttattgttcacatcattattaaatgtataccttgtactcatttttaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatctgagttattgttcacatcattattaaatgtataccttgtactcatttttaatat 260

                                                                       
Query: 61  atccatgtttgatgagtggtattgattgtcaatttgagtggatttagtaatctaggaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccatgtttgatgagtggtattgattgtcaatttgagtggatttagtaatctaggaaac 320

                                                                       
Query: 121 acaactatgggggcctctgtaggaatgtagggaggagtaacttagaaaagctgaccctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaactatgggggcctctgtaggaatgtagggaggagtaacttagaaaagctgaccctga 380

                                                                       
Query: 181 ctagggctagtatgcttcacctggcagagtacatagaacagggttcaaggttattgttgt 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||  | || |||
Sbjct: 381 ctagggctagtatgcttcacctggcagagtagatagaacagggttcaagggaaatggtgt 440

                                                                       
Query: 241 gtgaacaggtctccctttgcctcatatttctcagaaagtgcgcacatatctctgtagttt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 gtgaacaggtctccctttgcctcatatttctcagaaagtgcgcacatatctctgtagtct 500

                                                             
Query: 301 attaccagaagactccaggttcttcacgctcattgtatggactccatgtc 350
           | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actagcagaagactccaggttcttcacgctcattgtatggactccatgtc 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)