BAC Information

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BAC

Clone NameMSMg01-096J06
Chromosome3 (Build37)
Map Location 117,162,265 - 117,162,692
singlet/doubletsinglet
Overlap genenone
Upstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096J06.T7 (MSMg01no096_j06.b1)MSMg01-096J06.TJ (MSMg01no096_j06.g1)
ACCAG313222AG313223
length725742
length of high quality
(start - end)
348 (62 - 409)426 (72 - 497)
definitionCHROMAT_FILE: MSMg01no096_j06.b1 PHD_FILE: MSMg01no096_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:59 2005CHROMAT_FILE: MSMg01no096_j06.g1 PHD_FILE: MSMg01no096_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGGCGCTATACGACTCCTATAGGTACAGAATCCGCGGAATTCTCCACT
GAGGTATCTCCAATGGCCGAGAAGCACCTAAAGAAATGTTCAACATCCTT
AGTCATCAGGAAAATGCAAATCAAAATGACCCTGACAATCCACCTTACAC
GAATTAGAATGGCTAAGATCAAAACTCAAGGAACAGCAGATGCTGATGAG
GATGTGGAGAAAGAAGAACACTCCTCCATTGCTGGTAGGATTGCAAGCTG
GAACAACCACACTGGAAATCAATCTGATAGTTCATCAGAAAACTGGAAAT
AGTTCTACTTGAAGACCCATATATATCACTCCTGGGCATAATTTGTATAT
GGGGAGAGGCCATACATATGTGCACATGTGCATGAGTATGAATGATGGGT
GTGTATGACTCACCCAAATGAGTGTGAAAGTATAAATACCTGCCCATATA
TGTGTAGCAGCTAGAGCAGAAGGCGGAGTATTTTCTTCTCTAACTCTCTG
CCTTACTGTCTTGAGAACAGGTCCTTCAGTGAACTGGATATTTGCCTTTT
CGACTTGTTAAGATGGCCTGTGTACTCTTGTGAGCCATCTAGTTCCTGTT
TCCTGTTGGCGTTGGTTTTTTTATCATCCTTTCCTTCCTTACCACCTCTT
TCCCCCCCCCTTCTCTTCCTGTTGTTACTCCCTATCTTTTCCCCCCCCTT
ATACTACTCTTTTCTCTTTATTCTT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATCTCTTAGCTTCTGTTTTGCTTTCAA
GCACTGAGGTTCCAGGACTCTCATGATGAATCTGAGGCGAGCGCATCCTC
ACAGTTTTCTGAGCAGGCTTCAGATGTCCTTTACTCTCTTGCTTGTTGCT
GCTGCCTTTTGGAGAGAATTTCTTTTTTCTGACATCCTCCTTTGAAGGCT
TTCTTCCTATCCCTTAATTGTTCTCCTATGGAAGAAGCTACTTTCCTCAG
CCTAAAATTGCACCTCCAGTGGATGGTTCTGAAGTTGTATCCCCAGGGCC
TATGAAAGGCCGGTGCCCCTCCCACGTGCTTATTGCACAATAATCACATT
GGAATCAGGAAGCTATAGCCAAGGTCAGATCTGGTGTAATTAACTGAGTC
AGATCAATTAGAGGCCACATGGCAGGGCATTTCTCTGGAGTCCTTGGACC
AGGCACACAAATCCAAGATTTATCCCTTTATGGGATTATCAATGCAAAAT
GAAATTTTACATCCAGGGTGCTGCACAACATTAAACAAGTATAATTGTCA
CCGGACTCTATCTTTAGCGCCCACACTGACTATTTACACCCACAAAATTT
ACTACTTCATATGGACACCGGCTTGCCTTACAATTGAAATGTACTAACTA
TTTTTGCTGCCAACCAAGCTTGACACAGATAATTTGAGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_j06.g1 MSMg01no096_j06.g1 CHROMAT_FILE:
MSMg01no096_j06.g1 PHD_FILE: MSMg01no096_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:59 2005
         (426 letters)



>mm_chr3_117162065_117162892
          Length = 828

 Score =  716 bits (370), Expect = 0.0
 Identities = 413/428 (96%), Gaps = 2/428 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatctcttagcttctgttttgctttcaagcactgaggttccaggactctcatgatgaat 60
           |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tcatctcttagcttctattttgctttcaagcactgaggttccagggctctcatgatgaat 260

                                                                       
Query: 61  ctgaggcgagcgcatcctcacagttttctgagcaggcttcagatgtcctttactctcttg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ctgaggcgagctcatcctcacagttttctgagcaggcttcagatgtcttttactctcttg 320

                                                                       
Query: 121 cttgttgctgctgccttttggagagaatttcttttttc--tgacatcctcctttgaaggc 178
           |||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||
Sbjct: 321 cttgttgctgctgccttttggagagaatttctgttttctatgacatcctcctttgaaggc 380

                                                                       
Query: 179 tttcttcctatcccttaattgttctcctatggaagaagctactttcctcagcctaaaatt 238
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 381 tttcttcctatcccttaattgttctcctatgaaagaagctactttcttcagcctaaaatt 440

                                                                       
Query: 239 gcacctccagtggatggttctgaagttgtatccccagggcctatgaaaggccggtgcccc 298
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gcacctccagtggatggttctgaagttgtatccccagggcctatgaaaggccagtgcccc 500

                                                                       
Query: 299 tcccacgtgcttattgcacaataatcacattggaatcaggaagctatagccaaggtcaga 358
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccctcatgcttattgcacaataatcacattggaatcaggaagctatagccaaggtcaga 560

                                                                       
Query: 359 tctggtgtaattaactgagtcagatcaattagaggccacatggcagggcatttctctgga 418
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccctgtaattaactgagtcagatcaattagaggccacatggcagggcatttctctgga 620

                   
Query: 419 gtccttgg 426
           ||||||||
Sbjct: 621 gtccttgg 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 828
Length adjustment: 9
Effective length of query: 417
Effective length of database: 819
Effective search space:   341523
Effective search space used:   341523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)