BAC Information

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BAC

Clone NameMSMg01-096M18
Chromosome3 (Build37)
Map Location 17,982,641 - 18,076,827
singlet/doubletdoublet
Overlap geneCyp7b1
Upstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5
Downstream geneLOC622921, LOC100040153, Armc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096M18.T7 (MSMg01no096_m18.b1)MSMg01-096M18.TJ (MSMg01no096_m18.g1)
ACCAG313389AG313390
length694713
length of high quality
(start - end)
450 (49 - 498)482 (57 - 538)
definitionCHROMAT_FILE: MSMg01no096_m18.b1 PHD_FILE: MSMg01no096_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:17 2005CHROMAT_FILE: MSMg01no096_m18.g1 PHD_FILE: MSMg01no096_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,982,641 - 17,983,090)(18,076,384 - 18,076,827)
sequence
CTACTATCGGTCCGAAATCCGCGGAATTCACAATTATGATCCCGAACCAC
CTTCTTTACCTGGCCAGGAGAAAAAAATGGGTTTCTTTTTTTAAGGTAGA
AAATGAATATGATTAAAAGTTCTTTCCAGATAAAGAGATGTTTTAAGCTG
TGATGTTTTACAATCCAGTGGGAGGGAAATGACAAATCAAGGGAAATGCT
CGTAGGAAAAGGCACATCCGCTTTGTCTTTGAAATAATTCACAGATGATT
TCCATTTGTAGATTTTGAGTGCCAAAGCATATCATTATAATCAATAAATC
CTGCTGCACTGCAAACACAGATAAGCACATGCACATTTCTGCCTCATACT
CAAGCCATGTCTGTATATGTGGAATGAATACACTGTGACATGGCTGCGCT
ATTAATGTGGGTCACCTTAATGATTGGTGCAGGCTGGCATGCCACCTGAT
TAGCCATGGTGATCAGGGGATAGTGGCAATGGCAGCAGTGAAAAGAGCAG
CCAGCCCCACTATAGTCACTGGGTCTGAAAATGGATAGGAATAGGTAAGG
TAACGGACGTGACTTAGCTGTTCTCTACAAGGTCTGATGAAATGTAGCCT
AAGATGCACACATACTCACACTCATATTCATATACACACACCATCCTTAT
ACATTTTTTGAGTGTCTGGATATACATCCCCTACACAGATGAGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATTGAAAATGGGTCTTTGCCTCCCACCTTTTGCCTTCACTCATC
CACAAGAGCACTTTACCCTCCTAACAGAATGGAAACACAATTGAGATGTC
TGTAATGTACTCACCTGTCTGTGTGCAGCTTGTTATAACTGTGGAGAAAG
TGCTTTGACAATGGCAGGAAAGTTTATGAAGATATGTTCTTTAAGATGTG
TTCCTGTTATAAACTACTAGAAATTAGATAATTCCTTCTATGTGGTCTGG
TAATTTATATAATTTTAAATATGAAAGTAAGATTCCATCATTTTATAGTG
CCCTTTATGTATTATATATTGTACATAAAATGTAATCTATACTTATAACA
ATTACCACAATTGGCAAGCTTTATCTATATTTTTTAAAGTACTTGTCTTT
CCATATTGATCTTTTATTCAGTATTGGTTTAACCATTCATAAAACTTACT
GAGTTAATGCTATGGCCATTCACTATAGGTACACAGCAACATATTCAGTA
GGTTGCTGGAAATAAATTATTATTTGTCATAACAAATATAAATGACCATC
TAAGTTATAAGTAGATGATCTTAAATTCCTTCTCTGGAGTGGTGAGGGAT
TGACAGACGGGAAAGAGACCAGTTTTGCTGCCCAAAATGTATGAATCCAG
GCTTCTCTGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_m18.b1 MSMg01no096_m18.b1 CHROMAT_FILE:
MSMg01no096_m18.b1 PHD_FILE: MSMg01no096_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:17 2005
         (450 letters)



>mm_chr3_17982441_17983290
          Length = 850

 Score =  855 bits (442), Expect = 0.0
 Identities = 448/450 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accttctttacctggccaggagaaaaaaatgggtttctttttttaaggtagaaaatgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accttctttacctggccaggagaaaaaaatgggtttctttttttaaggtagaaaatgaat 260

                                                                       
Query: 61  atgattaaaagttctttccagataaagagatgttttaagctgtgatgttttacaatccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgattaaaagttctttccagataaagagatgttttaagctgtgatgttttacaatccag 320

                                                                       
Query: 121 tgggagggaaatgacaaatcaagggaaatgctcgtaggaaaaggcacatccgctttgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggagggaaatgacaaatcaagggaaatgctcgtaggaaaaggcacatccgctttgtct 380

                                                                       
Query: 181 ttgaaataattcacagatgatttccatttgtagattttgagtgccaaagcatatcattat 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 381 ttgaaataattcacagatgattcccatttgtagattttgagtgccaaagcagatcattat 440

                                                                       
Query: 241 aatcaataaatcctgctgcactgcaaacacagataagcacatgcacatttctgcctcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcaataaatcctgctgcactgcaaacacagataagcacatgcacatttctgcctcata 500

                                                                       
Query: 301 ctcaagccatgtctgtatatgtggaatgaatacactgtgacatggctgcgctattaatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaagccatgtctgtatatgtggaatgaatacactgtgacatggctgcgctattaatgt 560

                                                                       
Query: 361 gggtcaccttaatgattggtgcaggctggcatgccacctgattagccatggtgatcaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtcaccttaatgattggtgcaggctggcatgccacctgattagccatggtgatcaggg 620

                                         
Query: 421 gatagtggcaatggcagcagtgaaaagagc 450
           ||||||||||||||||||||||||||||||
Sbjct: 621 gatagtggcaatggcagcagtgaaaagagc 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no096_m18.g1 MSMg01no096_m18.g1 CHROMAT_FILE:
MSMg01no096_m18.g1 PHD_FILE: MSMg01no096_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:17 2005
         (482 letters)



>mm_chr3_18076384_18077265
          Length = 882

 Score =  820 bits (424), Expect = 0.0
 Identities = 439/444 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgaaaatgggtctttgcctcccaccttttgccttcactcatccacaagagcactttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attgaaaatgggtctttgcctcccaccttttgccttcactcatccacaagagcactttac 385

                                                                       
Query: 61  cctcctaacagaatggaaacacaattgagatgtctgtaatgtactcacctgtctgtgtgc 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 384 cctcctaacagaatggaaacacaattgagatctctgtaatgtactcacctgtctgtgtgc 325

                                                                       
Query: 121 agcttgttataactgtggagaaagtgctttgacaatggcaggaaagtttatgaagatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcttgttataactgtggagaaagtgctttgacaatggcaggaaagtttatgaagatatg 265

                                                                       
Query: 181 ttctttaagatgtgttcctgttataaactactagaaattagataattccttctatgtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctttaagatgtgttcctgttataaactactagaaattagataattccttctatgtggt 205

                                                                       
Query: 241 ctggtaatttatataattttaaatatgaaagtaagattccatcattttatagtgcccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctggtaatttatataattttaaatatgaaagtaagattccatcattttatagtgcccttt 145

                                                                       
Query: 301 atgtattatatattgtacataaaatgtaatctatacttataacaattaccacaattggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 144 atgtattatatattgtacataaaatgtaatctatacttataacaattacaacaatttgca 85

                                                                       
Query: 361 agctttatctatattttttaaagtacttgtctttccatattgatcttttattcagtattg 420
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 84  agctttatctatattttttaaagtacttgtcttttcatattgatcttttatttagtattg 25

                                   
Query: 421 gtttaaccattcataaaacttact 444
           ||||||||||||||||||||||||
Sbjct: 24  gtttaaccattcataaaacttact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)