Query= MSMg01no096_o03.b1 MSMg01no096_o03.b1 CHROMAT_FILE:
MSMg01no096_o03.b1 PHD_FILE: MSMg01no096_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:24 2005
(252 letters)
>mm_chr3_133864078_133864729
Length = 652
Score = 458 bits (237), Expect = e-133
Identities = 249/253 (98%), Gaps = 2/253 (0%)
Strand = Plus / Plus
Query: 1 tattcttaaccaa-caatgtattttaagcatctagaacatctgtacaacaaggactctta 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattcttaaccaaacaatgtattttaagcatctagaacatctgtacaacaaggactctta 260
Query: 60 tatcctccacaatatgggaacaagacagagagacatcagggacatggctaagggccagct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcctccacaatatgggaacaagacagagagacatcagggacatggctaagggccagct 320
Query: 120 aggctgtggaataacaagccgaaacaagaaaaattaatgcagcagaaggagatgcaacat 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggctgtggaaaaacaagccgaaacaagaaaaattaatgcagcagaaggagatgcaacat 380
Query: 180 aggcagagagtagtgactgccagtgtcctgtcttaaacaacttagccatttaatagaaga 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcagaaagtagtgactgccagtgtcctgtcttaaacaacttagccatttaatagaaga 440
Query: 240 agaaaaaaataag 252
|||||||| ||||
Sbjct: 441 agaaaaaa-taag 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no096_o03.g1 MSMg01no096_o03.g1 CHROMAT_FILE:
MSMg01no096_o03.g1 PHD_FILE: MSMg01no096_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:24 2005
(495 letters)
>mm_chr3_133984741_133985635
Length = 895
Score = 911 bits (471), Expect = 0.0
Identities = 486/491 (98%)
Strand = Plus / Minus
Query: 5 tctatttctatacgtatgccttatcagtatcagacatatattttccaaagatgttcttca 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tctatttctatacatatgccttatcagtatcagacatatattttccaaagatgttcttca 636
Query: 65 cgtttgtgacttctacttttattaccttaagaataactttcacagagtaaaagttttatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cgtttgtgacttctacttttattaccttaagaataactttcacagagtaaaagttttatc 576
Query: 125 agtgatgcagctgtgtagggatgatgcattggttgttgaatatgagaattcaaccaactc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agtgatgcagctgtgtagggatgatgcattggttgttgaatatgagaattcaaccaactc 516
Query: 185 agtgctactaagatgcgctccagggcttttctgtagatgtttagcaatttccttcttgct 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agtgctactaagatgcactccagggcttttctgtagatgtttagcaatttccttcttgct 456
Query: 245 tatggtactgctactcgctttgagatgggttttatgcaagctgtgagatctgagtttaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tatggtactgctactcgctttgagatgggttttatgcaagctgtgagatctgagtttaca 396
Query: 305 ttcatgctcctgcaagctcatatcaaatcctgatagttttattgatgagtgtgtctactc 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttcatgctcctgcaagctcctatcaaatcctgatagttttattgatgagtgtgtctactc 336
Query: 365 ttttggaaatcccttttctgtattaaaataagcttatatgagggtcagtttctgagtcct 424
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttttggaaatcccttttctgtataaaaataagcttatatgagggtcagtttctgagtcct 276
Query: 425 ctactctgattctattgattgttttcatcaatactacattatctttttggagaagggttg 484
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 275 ctactctgattctattgattgttttcatcaatactgcattatctttttggagaagggttg 216
Query: 485 tttctttgttg 495
|||||||||||
Sbjct: 215 tttctttgttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
