BAC Information

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BAC

Clone NameMSMg01-097C20
Chromosome3 (Build37)
Map Location 77,918,562 - 77,919,075
singlet/doubletsinglet
Overlap genenone
Upstream geneDnmt3a-ps1, EG626461, LOC667526
Downstream geneLOC626479, LOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097C20.T7 (MSMg01no097_c20.b1)MSMg01-097C20.TJ (MSMg01no097_c20.g1)
ACCAG313676AG313677
length751716
length of high quality
(start - end)
291 (78 - 368)512 (72 - 583)
definitionCHROMAT_FILE: MSMg01no097_c20.b1 PHD_FILE: MSMg01no097_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:49 2005CHROMAT_FILE: MSMg01no097_c20.g1 PHD_FILE: MSMg01no097_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACGAGTCTTCACGGATAGGAGGATGACATTATGAGAATGAGTCAT
TAACTAAGAAGAGCTCAAAGAGGCTCACAGAGACTAAAACTACAATCACA
TCCTGAATGGGTGTAAACTAGGTACACTGCATATATTTGGTGTTTTATTT
GTATAAATAATGGGAGTGGGTTACCTATGACTCTATTGCCTGGGCCTGGG
ATCCTTTAACACCTAGTGGTCACTTCATCCATCCTTGATATGAGGATTTG
TGCCTAGACATATTGAATTTTCTTATGCCATGTTGAACTGATATCCTTCA
GAGGACTGCTTTTCTTTTTTTAGGCCTCCGCACGATGGAGGTAGAATGGA
TCTGAAGAAGAGGGGAATCTCTTCCTATTAAAATAAATATTCTTCCCCCC
CGCGCTCCTTTCTTTTTTTTTTTAATCTTTACGGATATTATAAGTCCCCC
TCGTTTACTTTCAATACCTCTGTATCTATCCTTTTATCCCTTTCCCTTCT
CTTTTCCCGTATTCCTTCTATCGTCTTAACCTGCTACCCTCTTTTTTAAT
TCATTTCTTATATATTTACCGCTCCTTTTTTCCTTTTTTTTTTTTTTGCC
CCCTTAATATTCCCCTTTCGTGCCATTTCCCCCCCACTATTTCTACTCGC
CTAAAAAAATGTTCCCCCGCCTTTTTTTCCCCCCTCTCCATTATTCACTC
C
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAGGCTTTGTTTTTATTCAGATAGTAGA
GTTTGCCCAATATTTTCCTGAATTGACGGTAAAAATTAATACATTGCCTT
TCCTTCCAAATTATTTGATCAGCCAGTATAAAATTATGGGGCTGCTCAGC
ACTGATAGATAAATATATTAAATTATTTTTCAGAGTGTTTAAGTTGGTGT
TATACACTCATTCATACCTTCTTAGTGATAGCTGTGTCTCACATATTTTA
TGTATATATTTCTGAAGTGCCCATCCATGGAGAGGTTCACAAAATAAAAA
GAAAGAGGTCAGACGTTCCTCCTACTCAAAAATTAGTTCAAAATCTGGGG
CTGTTTTCTAATTCTGCATTTACCTTTACTTGGTTAAAATGTTAAGAATG
GTCTTCTGTCAGCCATGTTCTTAATTCAAAATGATAAAGACACTTTCAAA
ACAATTCTGGAGCCATCTTCCACTCATCAGCCTGGGGCTTACTGTGACAT
CATTACAACTTCCCCATTTACTTCTTAATTGGCAGTTCTGTACCAGAGAA
GGATATCGCCCTTTTTTTTTTTTCTCTTTTTGAACGCCCGCGGGGTCCCA
TCACTAAGATTTCCGGTACTGGGGGCAAAACTTGCCCTCAGGGCCTATTG
CGGGAAACGAGGGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_c20.g1 MSMg01no097_c20.g1 CHROMAT_FILE:
MSMg01no097_c20.g1 PHD_FILE: MSMg01no097_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:49 2005
         (512 letters)



>mm_chr3_77918203_77919114
          Length = 912

 Score =  963 bits (498), Expect = 0.0
 Identities = 510/514 (99%), Gaps = 2/514 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggctttgtttttattc-agatagtagagtttgcccaatattttcctgaattgacggt 59
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 aaaggctttgtttttattcaagatagtagagtttgcccaatattttcctgaattgacggt 814

                                                                       
Query: 60  aaaaattaatacattgcctttccttcc-aaattatttgatcagccagtataaaattatgg 118
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 813 aaaaattaatacattgcctttccttccaaaattatttgatcagccagtataaaattatgg 754

                                                                       
Query: 119 ggctgctcagcactgatagataaatatattaaattatttttcagagtgtttaagttggtg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ggctgctcagcactgatagataaatatattaaattatttttcagagtgtttaagttggtg 694

                                                                       
Query: 179 ttatacactcattcataccttcttagtgatagctgtgtctcacatattttatgtatatat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttatacactcattcataccttcttagtgatagctgtgtctcacatattttatgtatatat 634

                                                                       
Query: 239 ttctgaagtgcccatccatggagaggttcacaaaataaaaagaaagaggtcagacgttcc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttctgaagtgcccatccatggagaggttcacaaaataaaaagaaagaggtcagacgttcc 574

                                                                       
Query: 299 tcctactcaaaaattagttcaaaatctggggctgttttctaattctgcatttacctttac 358
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 573 tcctactcaaaaattagttcaaaatctggggctgtcttctaattctgcatttacctttac 514

                                                                       
Query: 359 ttggttaaaatgttaagaatggtcttctgtcagccatgttcttaattcaaaatgataaag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttggttaaaatgttaagaatggtcttctgtcagccatgttcttaattcaaaatgataaag 454

                                                                       
Query: 419 acactttcaaaacaattctggagccatcttccactcatcagcctggggcttactgtgaca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 acactttcaaaacaattctggagccatcttccactcatcagcctggggcttactgtgaca 394

                                             
Query: 479 tcattacaacttccccatttacttcttaattggc 512
           ||||||||||||| ||||||||||||||||||||
Sbjct: 393 tcattacaacttcaccatttacttcttaattggc 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)