BAC Information

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BAC

Clone NameMSMg01-097G16
Chromosome3 (Build37)
Map Location 109,909,942 - 109,910,117
singlet/doubletsinglet
Overlap geneNtng1
Upstream gene4930443G12Rik, Slc25a24, Vav3
Downstream geneLOC100043181, LOC100043183, Prmt6, LOC100043190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097G16.T7 (MSMg01no097_g16.b1)MSMg01-097G16.TJ (MSMg01no097_g16.g1)
ACCAG313851AG313852
length765791
length of high quality
(start - end)
286 (120 - 405)291 (130 - 420)
definitionCHROMAT_FILE: MSMg01no097_g16.b1 PHD_FILE: MSMg01no097_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:08 2005CHROMAT_FILE: MSMg01no097_g16.g1 PHD_FILE: MSMg01no097_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:09 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNNNTTTTNNNNNNNNTTTTTTTTNNTTTTTTTTNNNNTTTTACNNNN
CCTTCATAATTGGGCGCTATAACATCCTATATGCAGAGGACCGCGGATTC
CTTGCCTTTCCTCCCACTCAGTTAAAAAGTTTCAAAGAAGAGAATGAAAT
ATGAAAAATATCCTTCCCTATAAAAAATGGCTGACTATATTTGGGTATGA
GGTCAGCAGTGATAACTATAAGTTATAATATGTTTTCAGAACCTGACCCA
CAGTAGCTGCTGATAAAACATTTAAATAACGCCAGTCTATTTAATCATTT
AATTTTCAAATGTTTTAGACAATCAGCACCAGTAATTATGCTCAGTTTGC
ACCTGCTTATGAATCTTAATAATAATACATCTGCCATTTAAACAATAATT
TTTATTATTGTCACCATAATCACACCTTTTGCATGACTTATGATTTACAA
AGACAGTTAACCAATTTTGCAACTGTGTTCCTTACACTTAGTAAATTATC
CTGTATAACATTACTAAAGAATACTAAATAAATATTGGATAGATACTGAA
GTTTCTCTCTTGCCTTATATAATAGGACCAAGTTGTGCGCTAAGACCAAA
AATAGCACCTTACTTTTGCTTCTTAAACTCCAATCTTTTGATCTCCACTT
TATTTCTTGAAGGCCCTATTGTTTCTTTTAATTGTAAAATCCTACATACC
TTATTTGACCGGTAAATTGTTTTTTACCGTCCCTGTTTTTGAAGTTTAGC
CTGAACATCTTCCCG
NNNNCCCCCCCCCCCNNNNNTTTTTCCCTTTNTTCCTCTTTCCTCCTTCT
CCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATGATGCTGCATATACA
TCCACCTGCCTGAAAAGGGCATCAGATCCCCTTATAGATGGCTGTGAGTC
ACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAG
CGTTCTTAAACGCCGAGCCATCTCTCCAGGCCCAGTTCTCTGAAATCATT
TGCAACGTTTAAAAAAAAAATGTGCTTGCTGTCTCCTAACAATCAAGGGT
CTGGGCGTCACAGGATGCTGATTCCTAGTATAATCAAGAGAGAATTAATA
ACTGAATTGATATGTAAATAAAAAGCTTTGGCCTGCATGATATGAGCTAA
CAGAAAGTGATAGCAGTTCTTCTTTACAACATTTTCTCTGGCCAGACTGA
CATGTCTGGAAACCCCTGTAGAGCAAAAAGAACTCTTCTGACCCTGACCT
TGGTCACAAATCCCATTGGATTATTCTACAGAAGCGTCATACTCTCCTTT
AGAATGCTTTTCTCGTAGTTATCCCAGATAAAGCTGTGTGACAAATCAAC
ACTGTTCCTTTTCAAACATTTTTTTCCCAACTTTTCCGATTTCAATTGCA
TTAACCCAAGAACATACTCTTAAAAATCTCTCCTCCTAAGCACTTTCTGA
ACCCGTCTAACAATGACCCACCCATACAATCTTTTTATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_g16.b1 MSMg01no097_g16.b1 CHROMAT_FILE:
MSMg01no097_g16.b1 PHD_FILE: MSMg01no097_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:08 2005
         (286 letters)



>mm_chr3_109909742_109910430
          Length = 689

 Score =  306 bits (158), Expect = 1e-87
 Identities = 171/176 (97%), Gaps = 3/176 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttaaaaagtttcaaagaagagaa-tgaaatatg--aaaaatatccttccctataaaaa 57
           ||||||||||||||||||||||||| |||||||||  |||||||||||||  ||||||||
Sbjct: 201 agttaaaaagtttcaaagaagagaattgaaatatgaaaaaaatatccttcaatataaaaa 260

                                                                       
Query: 58  atggctgactatatttgggtatgaggtcagcagtgataactataagttataatatgtttt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggctgactatatttgggtatgaggtcagcagtgataactataagttataatatgtttt 320

                                                                   
Query: 118 cagaacctgacccacagtagctgctgataaaacatttaaataacgccagtctattt 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaacctgacccacagtagctgctgataaaacatttaaataacgccagtctattt 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 689
Length adjustment: 9
Effective length of query: 277
Effective length of database: 680
Effective search space:   188360
Effective search space used:   188360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)