BAC Information

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BAC

Clone NameMSMg01-097O15
Chromosome3 (Build37)
Map Location 8,930,856 - 8,931,044
singlet/doubletsinglet
Overlap geneTpd52
Upstream geneLOC633072, LOC545500, LOC620966, Stmn2, Hey1, LOC100039504, Mrps28
Downstream geneLOC100041389, LOC667886, Zbtb10, Zfp704, Pag1, LOC621504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097O15.T7 (MSMg01no097_o15.b1)MSMg01-097O15.TJ (MSMg01no097_o15.g1)
ACCAG314226AG314227
length744808
length of high quality
(start - end)
190 (176 - 365)146 (130 - 275)
definitionCHROMAT_FILE: MSMg01no097_o15.b1 PHD_FILE: MSMg01no097_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:49 2005CHROMAT_FILE: MSMg01no097_o15.g1 PHD_FILE: MSMg01no097_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AAAAAAAAAAAAAAAACCCCNNNNNNNNNNNTTCCNNNNNNNNACAAAGN
NNCCTCTATAATTGCGGCGCTAAAGATCACTNATCATGATGAGGGNGGAA
TTNNAAGTTTCCTATACAGGAGGATGANNACAGAGNCTCCTCCAGAACAG
ATGACAGAGAGCCCCTCCCCTGCCGACCTGTGTCCTGCTGCCCACTGCCA
GGTGCTGCCGGCGAGAGCCAAGCACATCTTGACAACGCTCATGGCTGCAG
ATTTCCACCAGATGTGCTTTTATTTAGCTTTACTTATTTCTTTGACCAAA
TAGTTGATGAATGAAACAAAGTGAAATCACTTGACCTCCACTCCAGGGAA
ACACTGTTAGCATGTTTTTTTTGTCCTTTGTATAGGAAACAGCATCATAG
AGTTTTTTTTTTTATCCCCCCCCCCCCCTAATGTGTTTCTCCTTAAAATC
ACTGTACATCTGGACCCTAATTAAAACTTTCTTTACTATCTACGTGAATC
ATTGTTTTGGGGTCTCTGTACACTTAATCAATTTCTAACAAACTGTCCTT
TTCTAAATTCTGGTTATTACAAGCCTTGGAATTATTTCATTCCTTTCAAA
AGAGAAATTACCAGCTACATTTTTTTCTCTCGGATAAACAGTTCTATGAG
GACCATATCTTGAATTTTCTCAGACACCAACCTAAATTACACACGCGTTT
ATTCTTTCCTACCGCTCTGTTAATTTAAAACATGCAGGCCCCCA
NNNAATCCCCNNNAANNNTTTCCGGATTTTCACCCTTTCCCCTTCTCCCC
NNCCCTCGATGCAGGTGTAGCCTGGGGGCGCCTGGTTCTAACAAGGGGTG
ACCTATAGAAGTTCCGCAAAAATCAGGAATCCAGGGCCACATAGTGAGAC
GCTGTCTCAAAAACAAAGCCCAGAAAGTTTATAAAGCTGTAGATTGAAAC
AAGAAGTAGTTGTAGGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAT
AGAGAGAGCGAGAGAGAGAGAGGAGAGATATACATATCTCCTTTCTCTAT
TTATCTACCATAATTTTCTCTGCTGATTCTTTCCTCGATAATACAAAGCC
ATTGCAAAAAAAACCATTTTTTTTTTTTCAAGACATGAAAACCAAAATTT
AGTTCACCTTTTTTTTTCCCCCCCCCCCCCCCTAAAACATTAATTTTCCC
TATTTTAACGTTCATCCCCCCCCCCTTTCGAACATTTACCTCCCCCGTTT
TCCCCCTCTTTTTTTCCCAATTCACGTTCGCTTCCATTCTCCCGTATAAC
CAACTCGTTATCTATTTTCCCCCAATCTCTTCCTTTTCCCCCACCATACT
TTAAATTCCCTCCCTTTTTCCATCTATCCTTATTTTTTCCTTTAGTCCTC
AATCCTACAATATCCTTTCATTAATCCCCCCTCTTCTGATCCCCCCGTGA
TAATATAATATTTGCTCTTCATAATCCTCCTTCATTCCCCCCGCTCGCCA
TTCCTTCGATTCATTCCTCTCTATTTTTTGCCTCCCCCTATCCCCACTCC
TTTCTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_o15.b1 MSMg01no097_o15.b1 CHROMAT_FILE:
MSMg01no097_o15.b1 PHD_FILE: MSMg01no097_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:49 2005
         (190 letters)



>mm_chr3_8930656_8931245
          Length = 590

 Score =  350 bits (181), Expect = e-101
 Identities = 187/189 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgtgtcctgctgcccactgccaggtgctgccggcgagagccaagcacatcttgacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 389 acctgtgtcctgctgcccactgccaggtgctgccggcgagagccaagtacatcttgacaa 330

                                                                       
Query: 61  cgctcatggctgcagatttccaccagatgtgcttttatttagctttacttatttctttga 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cgctcatggctgcggatttccaccagatgtgcttttatttagctttacttatttctttga 270

                                                                       
Query: 121 ccaaatagttgatgaatgaaacaaagtgaaatcacttgacctccactccagggaaacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ccaaatagttgatgaatgaaacaaagtgaaatcacttgacctccactccagggaaacact 210

                    
Query: 181 gttagcatg 189
           |||||||||
Sbjct: 209 gttagcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)